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Protein
Submitted name:

Peptidyl-prolyl cis-trans isomerase CYP20-3

Gene

ROC4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Protein predictedi

Functioni

Catalytic activityi

Peptidylproline (omega=180) = peptidylproline (omega=0).SAAS annotation

GO - Molecular functioni

  • peptidyl-prolyl cis-trans isomerase activity Source: TAIR

GO - Biological processi

  • cysteine biosynthetic process Source: TAIR
  • defense response to bacterium Source: TAIR
  • protein folding Source: InterPro
  • protein peptidyl-prolyl isomerization Source: TAIR
  • response to abscisic acid Source: TAIR
  • response to cytokinin Source: TAIR
  • response to light intensity Source: TAIR
  • response to mannitol Source: TAIR
  • response to oxidative stress Source: TAIR
  • response to salt stress Source: TAIR
  • signal transduction Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Isomerase, RotamaseUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Peptidyl-prolyl cis-trans isomerase CYP20-3Imported
Gene namesi
Name:ROC4Imported
Ordered Locus Names:At3g62030Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G62030.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: TAIR
  • chloroplast Source: TAIR
  • chloroplast envelope Source: TAIR
  • chloroplast stroma Source: TAIR
  • chloroplast thylakoid membrane Source: TAIR
  • cytosolic ribosome Source: TAIR
  • thylakoid Source: TAIR
  • thylakoid lumen Source: TAIR
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiF4IX26.
PRIDEiF4IX26.

Expressioni

Gene expression databases

ExpressionAtlasiF4IX26. baseline and differential.

Interactioni

Protein-protein interaction databases

IntActiF4IX26. 2 interactions.
STRINGi3702.AT3G62030.2.

Structurei

3D structure databases

ProteinModelPortaliF4IX26.
SMRiF4IX26. Positions 149-287.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini151 – 308158PPIase cyclophilin-typeInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 PPIase cyclophilin-type domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG0880. Eukaryota.
ENOG410Z0G4. LUCA.
KOiK03768.
OMAiADAWNIK.

Family and domain databases

Gene3Di2.40.100.10. 1 hit.
InterProiIPR029000. Cyclophilin-like_dom.
IPR024936. Cyclophilin-type_PPIase.
IPR020892. Cyclophilin-type_PPIase_CS.
IPR002130. Cyclophilin-type_PPIase_dom.
[Graphical view]
PANTHERiPTHR11071. PTHR11071. 2 hits.
PfamiPF00160. Pro_isomerase. 1 hit.
[Graphical view]
PRINTSiPR00153. CSAPPISMRASE.
SUPFAMiSSF50891. SSF50891. 1 hit.
PROSITEiPS00170. CSA_PPIASE_1. 1 hit.
PS50072. CSA_PPIASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4IX26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFRLLLLPYA VGAQQKLLQT PRETKVADAW NIKCQNLLLS KANQQKVFIF
60 70 80 90 100
NHSMASSSSM QMVHTSRSIA QIGFGVKSQL VSANRTTQSV CFGARSSGIA
110 120 130 140 150
LSSRLHYASP IKQFSGVYAT TKHQRTACVK SMAAEEEEVI EPQAKVTNKV
160 170 180 190 200
YFDVEIGGEV AGRIVMGLFG EVVPKTVENF RALCTGEKKY GYKGSSFHRI
210 220 230 240 250
IKDFMIQGGD FTEGNGTGGI SIYGAKFEDE NFTLKHTGPG ILSMANAGPN
260 270 280 290 300
TNGSQFFICT VKTSWLDNKH VVFGQVIEGM KLVRTLESQE TRAFDVPKKG
310
CRIYACGELP LDA
Length:313
Mass (Da):34,318
Last modified:June 28, 2011 - v1
Checksum:i5571382BA9CA7803
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002686 Genomic DNA. Translation: AEE80298.1.
RefSeqiNP_001154684.1. NM_001161212.1.
UniGeneiAt.24742.
At.48797.

Genome annotation databases

EnsemblPlantsiAT3G62030.2; AT3G62030.2; AT3G62030.
GeneIDi825376.
GrameneiAT3G62030.2; AT3G62030.2; AT3G62030.
KEGGiath:AT3G62030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002686 Genomic DNA. Translation: AEE80298.1.
RefSeqiNP_001154684.1. NM_001161212.1.
UniGeneiAt.24742.
At.48797.

3D structure databases

ProteinModelPortaliF4IX26.
SMRiF4IX26. Positions 149-287.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiF4IX26. 2 interactions.
STRINGi3702.AT3G62030.2.

Proteomic databases

PaxDbiF4IX26.
PRIDEiF4IX26.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G62030.2; AT3G62030.2; AT3G62030.
GeneIDi825376.
GrameneiAT3G62030.2; AT3G62030.2; AT3G62030.
KEGGiath:AT3G62030.

Organism-specific databases

TAIRiAT3G62030.

Phylogenomic databases

eggNOGiKOG0880. Eukaryota.
ENOG410Z0G4. LUCA.
KOiK03768.
OMAiADAWNIK.

Gene expression databases

ExpressionAtlasiF4IX26. baseline and differential.

Family and domain databases

Gene3Di2.40.100.10. 1 hit.
InterProiIPR029000. Cyclophilin-like_dom.
IPR024936. Cyclophilin-type_PPIase.
IPR020892. Cyclophilin-type_PPIase_CS.
IPR002130. Cyclophilin-type_PPIase_dom.
[Graphical view]
PANTHERiPTHR11071. PTHR11071. 2 hits.
PfamiPF00160. Pro_isomerase. 1 hit.
[Graphical view]
PRINTSiPR00153. CSAPPISMRASE.
SUPFAMiSSF50891. SSF50891. 1 hit.
PROSITEiPS00170. CSA_PPIASE_1. 1 hit.
PS50072. CSA_PPIASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiF4IX26_ARATH
AccessioniPrimary (citable) accession number: F4IX26
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: March 16, 2016
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.