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Protein
Submitted name:

Disease resistance protein (TIR-NBS-LRR class) family

Gene

At1g72860

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Disease resistance protein (TIR-NBS-LRR class) familyImported
Gene namesi
Ordered Locus Names:At1g72860Imported
ORF Names:F3N23.6Imported, F3N23_6Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G72860.
TAIRilocus:2032602. AT1G72860.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei635 – 654HelicalSequence analysisAdd BLAST20

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiF4IF00.

PTM databases

iPTMnetiF4IF00.

Expressioni

Gene expression databases

ExpressionAtlasiF4IF00. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G72860.1.

Structurei

3D structure databases

SMRiF4IF00.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 147TIRInterPro annotationAdd BLAST138

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410ZVQH. LUCA.
InParanoidiF4IF00.
OMAiDALCRFI.
OrthoDBiEOG09360R69.

Family and domain databases

Gene3Di3.40.50.10140. 1 hit.
3.80.10.10. 3 hits.
InterProiView protein in InterPro
IPR032675. LRR_dom_sf.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
IPR035897. Toll_tir_struct_dom_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00931. NB-ARC. 1 hit.
PF01582. TIR. 1 hit.
SMARTiView protein in SMART
SM00255. TIR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF52058. SSF52058. 1 hit.
SSF52200. SSF52200. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS50104. TIR. 1 hit.

Sequencei

Sequence statusi: Complete.

F4IF00-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSSSSPIW KYDVFLSFRG EDTRKNIVSH LHKQLVDKGV VTFKDDKKLE
60 70 80 90 100
LGDSISEEIS RAIQNSTYAL VILSENYASS SWCLDELRMV MDLHLKNKIK
110 120 130 140 150
VVPIFYGVDP SHVRHQTGSF TFDKYQDSKM PNKVTTWREA LTQIASLAGK
160 170 180 190 200
DFETCEDEAS MIEEIVKDIS KKLLIMQPVD FSDIVGMNAH MERLSPLLSM
210 220 230 240 250
DSENEVRMIG IWGMGGIGKT TIAKCLFDQF SQGFPARCFL ENVSKIYRKG
260 270 280 290 300
GVSSLAEKFL STTLGLSKKK MKGSGVKLGP QEIKARFGCR KVFVVLDNVD
310 320 330 340 350
DMRQMHAFAQ ESSWFGPGSR IIITTRDKGL LNTYGVRTVY EVKCMDNDAA
360 370 380 390 400
LQLFNQLAFK GALPPSELYE KLSIRASWLA QGLPVAIEAY GLFFRRMTSL
410 420 430 440 450
KEWDDALCRF IEAPDESVME ILKISYDGLE ETDKNVFLHV ACLFNGEPLR
460 470 480 490 500
RATTLLDDGV LQGCLGLKIL AEKSLIEITA SGYIKMHNLV DQTARAIVNQ
510 520 530 540 550
ESMQRRHGRG VLWNPYEIYE LLKRNTTSEP TNCMALHMCD MVYALHLGGY
560 570 580 590 600
TAYHDTLKFL KIYKHSNHIK SKLLFSGDDT NLLSSRLRLL HWDAFPLTTF
610 620 630 640 650
PCRFQPQDLV EIILHRSNLT SFWKETVVKA LNRSMLITMY LLVLNILAIF
660 670 680 690 700
LFFVEYAQGM PNLRRLDLSD SENLEQLPDL SMAVNLEELI TQGCKRLKKI
710 720 730 740 750
PESISYLTRL TTLDVSYCEE LASYITIREL NRSGRQIALY FSGKEVETRS
760 770 780 790 800
IANLSIGGNI HIQMFWLDGN VDHLSFTTEQ QGPDKLTKKE KQQAPGELTK
810 820 830 840 850
REQQQEPRKK TILCGFGSLM RKGRKVKATS EFLDHEWMMQ RDQLAPDNQQ
860 870 880 890 900
ALEFSTRTRQ ALQFLPEFHG QESVKKAQGK SQPTSKFHGF TSVDISRFRY
910 920 930 940 950
SSDGASFLCF SLSMFPCVKE LILINLNIKV IPDDVCGLKF LEKLDWSGND
960 970 980 990 1000
FETLPETMNQ LPRLKYASFR NCCRLKALPA LVQLETIKLS GCINLQSLLE
1010 1020 1030 1040 1050
LSYAEQDCGR FQWLELWVDG CKSIRSILDQ LRHFIKLSYL DLSSHEFEKL
1060 1070 1080 1090 1100
PSSIEVLSSL RTLCLNKCKK LKSIEGLPLC LKSLYAHGCE ILETVSLPLN
1110 1120 1130 1140 1150
HSVKHLDLSH CFGLKRDEHL IAQFLNEGEN EEVCFQLILP LLHCKQPELD
1160
HSPSFFLFVV VLE
Length:1,163
Mass (Da):132,529
Last modified:June 28, 2011 - v1
Checksum:i84DC1029F632759B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002684 Genomic DNA. Translation: AEE35383.1.
RefSeqiNP_177429.2. NM_105944.2.
UniGeneiAt.35053.
At.49497.

Genome annotation databases

EnsemblPlantsiAT1G72860.1; AT1G72860.1; AT1G72860.
GeneIDi843617.
GrameneiAT1G72860.1; AT1G72860.1; AT1G72860.

Similar proteinsi

Entry informationi

Entry nameiF4IF00_ARATH
AccessioniPrimary (citable) accession number: F4IF00
Entry historyiIntegrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: November 22, 2017
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported