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Protein

DExH-box ATP-dependent RNA helicase DExH7, chloroplastic

Gene

At1g58060

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi637 – 644ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicase, Hydrolase, RNA-binding
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DExH-box ATP-dependent RNA helicase DExH7, chloroplasticCurated (EC:3.6.4.13Curated)
Gene namesi
Ordered Locus Names:At1g58060Imported
ORF Names:T15M6.7Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G58060
TAIRilocus:2196265 AT1G58060

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 37ChloroplastSequence analysisAdd BLAST37
ChainiPRO_000043529738 – 1459DExH-box ATP-dependent RNA helicase DExH7, chloroplasticAdd BLAST1422

Proteomic databases

PaxDbiF4I9Q5
PRIDEiF4I9Q5

Expressioni

Gene expression databases

ExpressionAtlasiF4I9Q5 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G58060.1

Structurei

3D structure databases

ProteinModelPortaliF4I9Q5
SMRiF4I9Q5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini624 – 801Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST178
Domaini901 – 1076Helicase C-terminalPROSITE-ProRule annotationAdd BLAST176

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi742 – 745DEIH boxCurated4

Sequence similaritiesi

Belongs to the DExH box helicase family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG0920 Eukaryota
COG1643 LUCA
HOGENOMiHOG000240812
InParanoidiF4I9Q5
KOiK18995
OMAiCGYQIRM
OrthoDBiEOG093600JW

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR011709 DUF1605
IPR007502 Helicase-assoc_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF04408 HA2, 1 hit
PF00271 Helicase_C, 1 hit
PF07717 OB_NTP_bind, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00847 HA2, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F4I9Q5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPKKKPQKQ SNKAASSSSS SKSNYQKPSS GPKLQISAEN EDRLRRLLLN
60 70 80 90 100
SGRSGPSIPA PISNSLSKAQ KTKKLNNVYE KLSCEGFVDD QIELALSSLR
110 120 130 140 150
DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN
160 170 180 190 200
DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
210 220 230 240 250
EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG
260 270 280 290 300
QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
310 320 330 340 350
LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS
360 370 380 390 400
DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
410 420 430 440 450
IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS
460 470 480 490 500
GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
510 520 530 540 550
ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS
560 570 580 590 600
SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
610 620 630 640 650
TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF
660 670 680 690 700
ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
710 720 730 740 750
YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL
760 770 780 790 800
GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
810 820 830 840 850
QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK
860 870 880 890 900
KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
910 920 930 940 950
LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL
960 970 980 990 1000
PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1010 1020 1030 1040 1050
KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK
1060 1070 1080 1090 1100
LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1110 1120 1130 1140 1150
SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI
1160 1170 1180 1190 1200
AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1210 1220 1230 1240 1250
MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI
1260 1270 1280 1290 1300
GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1310 1320 1330 1340 1350
NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA
1360 1370 1380 1390 1400
FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1410 1420 1430 1440 1450
WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL

IEEGKPQHK
Length:1,459
Mass (Da):163,600
Last modified:June 28, 2011 - v1
Checksum:iCFC795CC532223C9
GO

Sequence cautioni

The sequence AAG50701 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC079604 Genomic DNA Translation: AAG50701.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE33493.1
AK227490 mRNA Translation: BAE99490.1
BT004601 mRNA Translation: AAO42847.1
PIRiG96613
RefSeqiNP_176103.2, NM_104588.4
UniGeneiAt.27872

Genome annotation databases

EnsemblPlantsiAT1G58060.1; AT1G58060.1; AT1G58060
GeneIDi842173
GrameneiAT1G58060.1; AT1G58060.1; AT1G58060
KEGGiath:AT1G58060

Similar proteinsi

Entry informationi

Entry nameiDEXH7_ARATH
AccessioniPrimary (citable) accession number: F4I9Q5
Secondary accession number(s): Q0WTQ8, Q84VZ2, Q9C6F9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2016
Last sequence update: June 28, 2011
Last modified: May 23, 2018
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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