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F4I972

- F4I972_ARATH

UniProt

F4I972 - F4I972_ARATH

Protein
Submitted name:

MADs box transcription factor SEPALLATA3

Gene

SEP3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotationSAAS annotation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    MADs box transcription factor SEPALLATA3Imported
    Gene namesi
    Name:SEP3Imported
    Ordered Locus Names:At1g24260Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 1

    Organism-specific databases

    TAIRiAT1G24260.

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotationSAAS annotation

    PTM / Processingi

    Proteomic databases

    PRIDEiF4I972.

    Structurei

    3D structure databases

    ProteinModelPortaliF4I972.
    SMRiF4I972. Positions 2-70.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 MADS-box domain.UniRule annotation
    Contains K-box domain.SAAS annotation
    Contains MADS-box domain.SAAS annotation

    Family and domain databases

    InterProiIPR002487. TF_Kbox.
    IPR002100. TF_MADSbox.
    [Graphical view]
    PfamiPF01486. K-box. 1 hit.
    PF00319. SRF-TF. 1 hit.
    [Graphical view]
    PRINTSiPR00404. MADSDOMAIN.
    SMARTiSM00432. MADS. 1 hit.
    [Graphical view]
    SUPFAMiSSF55455. SSF55455. 1 hit.
    PROSITEiPS51297. K_BOX. 1 hit.
    PS00350. MADS_BOX_1. 1 hit.
    PS50066. MADS_BOX_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4I972-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN    50
    RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK 100
    LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM 150
    LDQLNDLQSK LADGYQMPLQ LNPNQEEVDH YGRHHHQQQQ HSQAFFQPLE 200
    CEPILQIGYQ GQQDGMGAGP SVNNYMLGWL PYDTNSI 237
    Length:237
    Mass (Da):27,323
    Last modified:June 28, 2011 - v1
    Checksum:i6F28F15FF138F86B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002684 Genomic DNA. Translation: AEE30504.1.
    RefSeqiNP_001185081.1. NM_001198152.1.
    UniGeneiAt.24086.

    Genome annotation databases

    EnsemblPlantsiAT1G24260.3; AT1G24260.3; AT1G24260.
    GeneIDi839040.
    KEGGiath:AT1G24260.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002684 Genomic DNA. Translation: AEE30504.1 .
    RefSeqi NP_001185081.1. NM_001198152.1.
    UniGenei At.24086.

    3D structure databases

    ProteinModelPortali F4I972.
    SMRi F4I972. Positions 2-70.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi F4I972.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT1G24260.3 ; AT1G24260.3 ; AT1G24260 .
    GeneIDi 839040.
    KEGGi ath:AT1G24260.

    Organism-specific databases

    TAIRi AT1G24260.

    Family and domain databases

    InterProi IPR002487. TF_Kbox.
    IPR002100. TF_MADSbox.
    [Graphical view ]
    Pfami PF01486. K-box. 1 hit.
    PF00319. SRF-TF. 1 hit.
    [Graphical view ]
    PRINTSi PR00404. MADSDOMAIN.
    SMARTi SM00432. MADS. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55455. SSF55455. 1 hit.
    PROSITEi PS51297. K_BOX. 1 hit.
    PS00350. MADS_BOX_1. 1 hit.
    PS50066. MADS_BOX_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
      Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
      , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
      Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiF4I972_ARATH
    AccessioniPrimary (citable) accession number: F4I972
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3