F4HJ14 (F4HJ14_PYRSN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA-directed RNA polymerase subunit K HAMAP-Rule MF_00192
EC=2.7.7.6 HAMAP-Rule MF_00192

Gene names

Name:	rpoK HAMAP-Rule MF_00192
Ordered Locus Names:	PNA2_0216

Organism

Pyrococcus sp. (strain NA2) [Complete proteome] [HAMAP]

Taxonomic identifier

342949 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Pyrococcus

Protein attributes

Sequence length	57 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity. HAMAP-Rule MF_00192
Catalytic activity	Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). HAMAP-Rule MF_00192
Sequence similarities	Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. HAMAP-Rule MF_00192

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase HAMAP-Rule MF_00192 EMBL AEC51134.1
Molecular function	Nucleotidyltransferase HAMAP-Rule MF_00192 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: HAMAP
Cellular_component	RNA polymerase complex Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: HAMAP DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4HJ14 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 16AFCFD2CFD80976	FASTA	57	6,299
	10 20 30 40 50 MFKYTRFEKA RIIGARALQI AMGAPILIDV PEGITPLDAA IMEFERGVIP ITVIRPS

References

[1]

"Complete genome sequence of hyperthermophilic Pyrococcus sp. strain NA2, isolated from a deep-sea hydrothermal vent area." Lee H.S., Bae S.S., Kim M.S., Kwon K.K., Kang S.G., Lee J.H. J. Bacteriol. 193:3666-3667(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NA2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002670 Genomic DNA. Translation: AEC51134.1.
RefSeq	YP_004423138.1. NC_015474.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEC51134; AEC51134; PNA2_0216.
GeneID	10553676.
KEGG	pyn:PNA2_0216.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K03055.
Enzyme and pathway databases
BioCyc	PSP342949:GI74-224-MONOMER.
Family and domain databases
Gene3D	3.90.940.10. 1 hit.
HAMAP	MF_00192. RNApol_arch_K.
InterPro	IPR020708. DNA-dir_RNA_polK_14-18kDa_CS. IPR006110. RNA_poly_omega/K/RPABC2. IPR006111. RNAP_K/Rpb6. IPR012293. RNAP_RPB6_omega. [Graphical view]
PANTHER	PTHR10773. PTHR10773. 1 hit.
Pfam	PF01192. RNA_pol_Rpb6. 1 hit. [Graphical view]
PIRSF	PIRSF000778. RpoK/RPB6. 1 hit.
SUPFAM	SSF63562. RNA_pol_omega. 1 hit.
PROSITE	PS01111. RNA_POL_K_14KD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4HJ14_PYRSN

Accession

Primary (citable) accession number: F4HJ14

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)