Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP dependent DNA ligase

Gene

Celf_2588

Organism
Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCFIM590998:GJFK-2623-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Celf_2588Imported
OrganismiCellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547)Imported
Taxonomic identifieri590998 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesCellulomonadaceaeCellulomonas
ProteomesiUP000008460 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi590998.Celf_2588.

Structurei

3D structure databases

ProteinModelPortaliF4H5Y3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4H5Y3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLPVMPPVA PMLAKSVPTI PDVGHVEPKW DGFRTIVFRD GDEVELGSRN
60 70 80 90 100
EKPMTRYFPE LVEAIRANTP ERCVLDGEIV VVTGDRLDFD ALQQRIHPAA
110 120 130 140 150
SRVRLLAGST PASFVAFDLL ALDDEDYMQR PFRDRRAALV EALADARDPV
160 170 180 190 200
FVTPATGDLA QAQDWFTRFE GAGLDGVVAK PLDGTYQPDK RTMFKIKHER
210 220 230 240 250
TADCVVAGFR WHKTGDVVGS LLLGLYDDDG DLQHVGVSAS FPMARRRTLL
260 270 280 290 300
DDLAPYRDVE LADHPWGRWA QAEAHAGNRM PGAVSRWNAK KDLSFVPLRP
310 320 330 340 350
ELVVEVAYDH MEGDRFRHTA QFRRWRTDRD PRSCTYAQLE QPVTFDLAEI

FGR
Length:353
Mass (Da):39,824
Last modified:June 28, 2011 - v1
Checksum:iA1F54DF6CDCB88E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002666 Genomic DNA. Translation: AEE46713.1.
RefSeqiWP_013771739.1. NC_015514.1.

Genome annotation databases

EnsemblBacteriaiAEE46713; AEE46713; Celf_2588.
KEGGicfi:Celf_2588.
PATRICi54616147. VBICelFim18861_2597.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002666 Genomic DNA. Translation: AEE46713.1.
RefSeqiWP_013771739.1. NC_015514.1.

3D structure databases

ProteinModelPortaliF4H5Y3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi590998.Celf_2588.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEE46713; AEE46713; Celf_2588.
KEGGicfi:Celf_2588.
PATRICi54616147. VBICelFim18861_2597.

Phylogenomic databases

OMAiHERTADC.

Enzyme and pathway databases

BioCyciCFIM590998:GJFK-2623-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Cellulomonas fimi ATCC 484."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Mead D., Brumm P., Woyke T.
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547Imported.

Entry informationi

Entry nameiF4H5Y3_CELFA
AccessioniPrimary (citable) accession number: F4H5Y3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: July 22, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.