ID F4GQ88_PUSST Unreviewed; 514 AA. AC F4GQ88; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 28-JUN-2011, sequence version 1. DT 27-MAR-2024, entry version 70. DE RecName: Full=3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000256|HAMAP-Rule:MF_01636}; DE EC=4.1.1.98 {ECO:0000256|HAMAP-Rule:MF_01636}; DE AltName: Full=Polyprenyl p-hydroxybenzoate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01636}; GN Name=ubiD {ECO:0000256|HAMAP-Rule:MF_01636}; GN OrderedLocusNames=PT7_2058 {ECO:0000313|EMBL:AEC20598.1}; OS Pusillimonas sp. (strain T7-7). OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Pusillimonas. OX NCBI_TaxID=1007105 {ECO:0000313|EMBL:AEC20598.1, ECO:0000313|Proteomes:UP000008737}; RN [1] {ECO:0000313|EMBL:AEC20598.1, ECO:0000313|Proteomes:UP000008737} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=T7-7 {ECO:0000313|EMBL:AEC20598.1, RC ECO:0000313|Proteomes:UP000008737}; RX PubMed=21622753; DOI=10.1128/JB.05242-11; RA Cao B., Ma T., Ren Y., Ren Y., Li G., Li P., Guo X., Ding P., Feng L.; RT "Complete genome sequence of Pusillimonas sp. T7-7, a cold-tolerant diesel RT oil-degrading bacterium isolated from the Bohai Sea in China."; RL J. Bacteriol. 193:4021-4022(2011). RN [2] RP NUCLEOTIDE SEQUENCE. RC STRAIN=T7-7; RA Cao B., Ma T., Li P., Jiang L., Li Y., Guo X., Feng L.; RT "Genome Announcement Complete Genome Sequence of Pusillimonas sp. T7-7, a RT novel species isolated from the Bohai Sea, China."; RL Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy CC benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone CC biosynthesis. {ECO:0000256|HAMAP-Rule:MF_01636}. CC -!- CATALYTIC ACTIVITY: CC Reaction=a 4-hydroxy-3-all-trans-polyprenylbenzoate + H(+) = a 2-all- CC trans-polyprenylphenol + CO2; Xref=Rhea:RHEA:41680, Rhea:RHEA- CC COMP:9514, Rhea:RHEA-COMP:9516, ChEBI:CHEBI:1269, ChEBI:CHEBI:15378, CC ChEBI:CHEBI:16526, ChEBI:CHEBI:78396; EC=4.1.1.98; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01636}; CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000256|HAMAP- CC Rule:MF_01636}; CC -!- COFACTOR: CC Name=prenyl-FMN; Xref=ChEBI:CHEBI:87746; Evidence={ECO:0000256|HAMAP- CC Rule:MF_01636}; CC Note=Binds 1 prenylated FMN (prenyl-FMN) per subunit. CC {ECO:0000256|HAMAP-Rule:MF_01636}; CC -!- PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_01636}. CC -!- SUBUNIT: Homohexamer. {ECO:0000256|HAMAP-Rule:MF_01636}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP-Rule:MF_01636}; CC Peripheral membrane protein {ECO:0000256|HAMAP-Rule:MF_01636}. CC -!- SIMILARITY: Belongs to the UbiD family. {ECO:0000256|HAMAP- CC Rule:MF_01636}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; CP002663; AEC20598.1; -; Genomic_DNA. DR RefSeq; WP_013743132.1; NC_015458.1. DR AlphaFoldDB; F4GQ88; -. DR STRING; 1007105.PT7_2058; -. DR KEGG; put:PT7_2058; -. DR eggNOG; COG0043; Bacteria. DR HOGENOM; CLU_023348_4_1_4; -. DR OrthoDB; 9809841at2; -. DR UniPathway; UPA00232; -. DR Proteomes; UP000008737; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008694; F:3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006744; P:ubiquinone biosynthetic process; IEA:UniProtKB-UniRule. DR Gene3D; 1.20.5.570; Single helix bin; 1. DR Gene3D; 3.40.1670.10; UbiD C-terminal domain-like; 1. DR HAMAP; MF_01636; UbiD; 1. DR InterPro; IPR002830; UbiD. DR InterPro; IPR049381; UbiD-like_C. DR InterPro; IPR049383; UbiD-like_N. DR InterPro; IPR023677; UbiD_bacteria. DR InterPro; IPR048304; UbiD_Rift_dom. DR NCBIfam; TIGR00148; UbiD family decarboxylase; 2. DR PANTHER; PTHR30108; 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED; 1. DR PANTHER; PTHR30108:SF17; FERULIC ACID DECARBOXYLASE 1; 1. DR Pfam; PF01977; UbiD; 1. DR Pfam; PF20696; UbiD_C; 1. DR Pfam; PF20695; UbiD_N; 1. DR SUPFAM; SSF50475; FMN-binding split barrel; 1. DR SUPFAM; SSF143968; UbiD C-terminal domain-like; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|ARBA:ARBA00022475, ECO:0000256|HAMAP- KW Rule:MF_01636}; KW Decarboxylase {ECO:0000256|ARBA:ARBA00022793, ECO:0000256|HAMAP- KW Rule:MF_01636}; KW Flavoprotein {ECO:0000256|ARBA:ARBA00022630, ECO:0000256|HAMAP- KW Rule:MF_01636}; KW FMN {ECO:0000256|ARBA:ARBA00022643, ECO:0000256|HAMAP-Rule:MF_01636}; KW Lyase {ECO:0000256|ARBA:ARBA00023239, ECO:0000256|HAMAP-Rule:MF_01636}; KW Manganese {ECO:0000256|ARBA:ARBA00023211, ECO:0000256|HAMAP-Rule:MF_01636}; KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|HAMAP-Rule:MF_01636}; KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP- KW Rule:MF_01636}; KW Ubiquinone biosynthesis {ECO:0000256|ARBA:ARBA00022688, ECO:0000256|HAMAP- KW Rule:MF_01636}. FT DOMAIN 10..93 FT /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like N- FT terminal" FT /evidence="ECO:0000259|Pfam:PF20695" FT DOMAIN 126..349 FT /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-likw FT Rift-related" FT /evidence="ECO:0000259|Pfam:PF01977" FT DOMAIN 355..479 FT /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like C- FT terminal" FT /evidence="ECO:0000259|Pfam:PF20696" FT ACT_SITE 314 FT /note="Proton donor" FT /evidence="ECO:0000256|HAMAP-Rule:MF_01636" FT BINDING 177 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /evidence="ECO:0000256|HAMAP-Rule:MF_01636" FT BINDING 180..182 FT /ligand="prenyl-FMN" FT /ligand_id="ChEBI:CHEBI:87746" FT /evidence="ECO:0000256|HAMAP-Rule:MF_01636" FT BINDING 194..196 FT /ligand="prenyl-FMN" FT /ligand_id="ChEBI:CHEBI:87746" FT /evidence="ECO:0000256|HAMAP-Rule:MF_01636" FT BINDING 199..200 FT /ligand="prenyl-FMN" FT /ligand_id="ChEBI:CHEBI:87746" FT /evidence="ECO:0000256|HAMAP-Rule:MF_01636" FT BINDING 243 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /evidence="ECO:0000256|HAMAP-Rule:MF_01636" SQ SEQUENCE 514 AA; 56940 MW; 96F15EC7CBE0FD49 CRC64; MKYRDLRDFI AQLERTGELK RVSLPVSTEL EMTEISDRVL RAGGPALLFE QATHNGAAST MPVLTNLFGT PQRVAWGMGA DNVSALRTTG ELLASLREPE PPRGLRNALA TVSMLKNALW DMSPKTVKNA PCQEIVLEGD DVDLNQIPLQ RCWPGDVAPL LTWGLVITRG PNAKRQNLGI YRQQLIGRNK LIMRWLSHRG GALDFRDHAL AHPGTPFPVA VALGADPATI LGAVTPVPDS LSEYQFAGLL RGSRTEVTQA LGSTLSVPAY AEIVLEGHLL PSSDPRATKP VPPEGVAAPV DASYEMALEG PYGDHTGYYN EQDWFPVFTV ERITMRRNPI YHSTYTGKPP DEPAVLGVAL NEVFVPLLKR QLPEIVDFYL PPEGCSYRLA VVSMRKQYAG HAKRVMFGLW SILRQFMYTK FIVVVDDDID VRDWKEVVWA MTTRMDPVRD TVLVENTPID YLDFASPVSG LGGKMGLDAT NKWPGESTRE WGTPIVMDQN IKARVDAMWN ELGL //