F4GCJ4 (F4GCJ4_ALIDK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

Alide2_3600 EMBL AEB85926.1

Organism

Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) [Complete proteome] [HAMAP] EMBL AEB85926.1

Taxonomic identifier

596154 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Alicycliphilus › Alicycliphilus denitrificans

Protein attributes

Sequence length	802 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS007624
Molecular function	Sigma factor RuleBase RU000715 SAAS SAAS007624
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4GCJ4 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: E02C9C576CE608A3	FASTA	802	89,003
	10 20 30 40 50 60 MPVQKSAKSP KPASGTAAKA ASKAATPVKT AAKAPAKAAT AKAADAALQA ATKVKTVPTP 70 80 90 100 110 120 KTTAELTKAA DELLKKKPAR APKAAAAQAE ASEDAPKKKP GRPAKAAGSA TAAAKAPAKR 130 140 150 160 170 180 GRKPKAKEEG LEDDADLSDI EAELEGEPEA PEAEAEAATA EKAKPLRMKI SKAKERALMK 190 200 210 220 230 240 EFGLDETVLS EEDMAKRRSQ LKKLITLGKT RGYLTQVEIS DHLPDKLVDA ETMEVVVAML 250 260 270 280 290 300 GDMGVAVYEQ TPDAETLFQN NVAPTATTVE EAEEEAEAAL STVDSEFGRT TDPVRMYMRE 310 320 330 340 350 360 MGTVELLTRE GEIEIAKRIE GGLMDMMEAI SASPATIAEI LNMGEEIREG KVVISTVVDG 370 380 390 400 410 420 FSNPEEADDY VAEEDFDEYD EEDDDDGKGG SKAMTRLLEK LKTEALDRFD ELRSLFEKMH 430 440 450 460 470 480 KIYDKEGYGS PAYMKVQHEI SAKLMTIRFT AKTIEKLCDM VRAQVDDVRK KERELRRIIV 490 500 510 520 530 540 DKCGMPQETF IKEFPPNLLN LQWVEKQAAA GKPWSAVMQR NIPPIQELQQ HLIDLQSRVV 550 560 570 580 590 600 VPLAELKAIN KRMNQGEANS RDAKKEMIEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL 610 620 630 640 650 660 MKAVDKFEYR RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK MNRISRQHLQ 670 680 690 700 710 720 EFGFEPDASI LAAKMEIPED KIRKIMKIAK EPISMETPIG DDDDSHLGDF IEDSNNTAPI 730 740 750 760 770 780 DAAMQAGLRD VVKDILDGLT PREAKVLRMR FGIEMSTDHT LEEVGKQFDV TRERIRQIEA 790 800 KALRKLKHPS RSDKLRSFID SL

References

[1]

"Complete sequence of chromosome of Alicycliphilus denitrificans K601." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Zeytun A., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Oosterkamp M. , Pieper D., van Berkel W., Langenhoff A., Smidt H., Stams A., Woyke T. Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 14773 / CIP 107495 / K601.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002657 Genomic DNA. Translation: AEB85926.1.
RefSeq	YP_004389442.1. NC_015422.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEB85926; AEB85926; Alide2_3600.
GeneID	10484660.
KEGG	adk:Alide2_3600.
PATRIC	54529923. VBIAliDen79014_3623.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K03086.
Enzyme and pathway databases
BioCyc	ADEN596154:GHU6-3645-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 2 hits.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR007631. RNA_pol_sigma_70_non-ess. IPR007127. RNA_pol_sigma_70_r1_1. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012760. RNA_pol_sigma_RpoD_C. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04546. Sigma70_ner. 1 hit. PF03979. Sigma70_r1_1. 1 hit. PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02393. RpoD_Cterm. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4GCJ4_ALIDK

Accession

Primary (citable) accession number: F4GCJ4

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	May 29, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)