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Protein
Submitted name:

Pseudouridine synthase

Gene

Alide2_2906

Organism
Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciADEN596154:GHU6-2938-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pseudouridine synthaseImported
Gene namesi
Ordered Locus Names:Alide2_2906Imported
OrganismiAlicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601)Imported
Taxonomic identifieri596154 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAlicycliphilus
ProteomesiUP000007938 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi596154.Alide2_2906.

Family & Domainsi

Phylogenomic databases

KOiK06177.

Family and domain databases

InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4G4Y1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHNSHDPRVL PMRDGVNPCC VVLPSQGQGL LLDFLARRLP AVSREDWLRR
60 70 80 90 100
LHAGEVVDEW GRAATAHSPF TPGVRYYYYR ELAHEAEIPF QETVLYQDEH
110 120 130 140 150
ILVADKPHFL PVVPAGRYLQ HTLLVRLKRR LGLRELSPVH RIDRDTAGLV
160 170 180 190 200
LFSVQRATRG RYQALFRDRQ VRKVYEAVAP WRADLRFPRT HASRLQESGH
210 220 230 240 250
FFRMHEVPGE PNAVTAMDVA EQAGGWARYR LEPVTGKRHQ LRVHMAALGL
260 270 280 290 300
PLCGDGFYPE VNDPPEGDYS NPLQLLARTL SFTDPVTGQE RRFDSRLRLR
310
PLADFAGPAT AGAPRA
Length:316
Mass (Da):35,952
Last modified:June 28, 2011 - v1
Checksum:i82193D8BC7CD48FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002657 Genomic DNA. Translation: AEB85254.1.
RefSeqiWP_013722413.1. NC_015422.1.
YP_004388770.1. NC_015422.1.

Genome annotation databases

EnsemblBacteriaiAEB85254; AEB85254; Alide2_2906.
KEGGiadk:Alide2_2906.
PATRICi54528508. VBIAliDen79014_2933.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002657 Genomic DNA. Translation: AEB85254.1.
RefSeqiWP_013722413.1. NC_015422.1.
YP_004388770.1. NC_015422.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi596154.Alide2_2906.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB85254; AEB85254; Alide2_2906.
KEGGiadk:Alide2_2906.
PATRICi54528508. VBIAliDen79014_2933.

Phylogenomic databases

KOiK06177.

Enzyme and pathway databases

BioCyciADEN596154:GHU6-2938-MONOMER.

Family and domain databases

InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Alicycliphilus denitrificans K601."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Zeytun A., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Oosterkamp M.
    , Pieper D., van Berkel W., Langenhoff A., Smidt H., Stams A., Woyke T.
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14773 / CIP 107495 / K601Imported.

Entry informationi

Entry nameiF4G4Y1_ALIDK
AccessioniPrimary (citable) accession number: F4G4Y1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 24, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.