F4G4Y1 (F4G4Y1_ALIDK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

Alide2_2906 EMBL AEB85254.1

Organism

Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) [Complete proteome] [HAMAP] EMBL AEB85254.1

Taxonomic identifier

596154 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Alicycliphilus › Alicycliphilus denitrificans

Protein attributes

Sequence length	316 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4G4Y1 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 82193D8BC7CD48FD	FASTA	316	35,952
	10 20 30 40 50 60 MHNSHDPRVL PMRDGVNPCC VVLPSQGQGL LLDFLARRLP AVSREDWLRR LHAGEVVDEW 70 80 90 100 110 120 GRAATAHSPF TPGVRYYYYR ELAHEAEIPF QETVLYQDEH ILVADKPHFL PVVPAGRYLQ 130 140 150 160 170 180 HTLLVRLKRR LGLRELSPVH RIDRDTAGLV LFSVQRATRG RYQALFRDRQ VRKVYEAVAP 190 200 210 220 230 240 WRADLRFPRT HASRLQESGH FFRMHEVPGE PNAVTAMDVA EQAGGWARYR LEPVTGKRHQ 250 260 270 280 290 300 LRVHMAALGL PLCGDGFYPE VNDPPEGDYS NPLQLLARTL SFTDPVTGQE RRFDSRLRLR 310 PLADFAGPAT AGAPRA

References

[1]

"Complete sequence of chromosome of Alicycliphilus denitrificans K601." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Zeytun A., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Oosterkamp M. , Pieper D., van Berkel W., Langenhoff A., Smidt H., Stams A., Woyke T. Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 14773 / CIP 107495 / K601.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002657 Genomic DNA. Translation: AEB85254.1.
RefSeq	YP_004388770.1. NC_015422.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEB85254; AEB85254; Alide2_2906.
GeneID	10483954.
KEGG	adk:Alide2_2906.
PATRIC	54528508. VBIAliDen79014_2933.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K06177.
Enzyme and pathway databases
BioCyc	ADEN596154:GHU6-3027-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4G4Y1_ALIDK

Accession

Primary (citable) accession number: F4G4Y1

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)