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F4G4Y1

- F4G4Y1_ALIDK

UniProt

F4G4Y1 - F4G4Y1_ALIDK

Protein

Pseudouridine synthase

Gene

Alide2_2906

Organism
Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. pseudouridine synthase activity Source: InterPro
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro

    Keywords - Molecular functioni

    IsomeraseUniRule annotation

    Enzyme and pathway databases

    BioCyciADEN596154:GHU6-2938-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
    Gene namesi
    Ordered Locus Names:Alide2_2906Imported
    OrganismiAlicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601)Imported
    Taxonomic identifieri596154 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAlicycliphilus
    ProteomesiUP000007938: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase rluA family.UniRule annotation

    Phylogenomic databases

    KOiK06177.

    Family and domain databases

    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    [Graphical view]
    PfamiPF00849. PseudoU_synth_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    PROSITEiPS01129. PSI_RLU. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4G4Y1-1 [UniParc]FASTAAdd to Basket

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    MHNSHDPRVL PMRDGVNPCC VVLPSQGQGL LLDFLARRLP AVSREDWLRR    50
    LHAGEVVDEW GRAATAHSPF TPGVRYYYYR ELAHEAEIPF QETVLYQDEH 100
    ILVADKPHFL PVVPAGRYLQ HTLLVRLKRR LGLRELSPVH RIDRDTAGLV 150
    LFSVQRATRG RYQALFRDRQ VRKVYEAVAP WRADLRFPRT HASRLQESGH 200
    FFRMHEVPGE PNAVTAMDVA EQAGGWARYR LEPVTGKRHQ LRVHMAALGL 250
    PLCGDGFYPE VNDPPEGDYS NPLQLLARTL SFTDPVTGQE RRFDSRLRLR 300
    PLADFAGPAT AGAPRA 316
    Length:316
    Mass (Da):35,952
    Last modified:June 28, 2011 - v1
    Checksum:i82193D8BC7CD48FD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002657 Genomic DNA. Translation: AEB85254.1.
    RefSeqiWP_013722413.1. NC_015422.1.
    YP_004388770.1. NC_015422.1.

    Genome annotation databases

    EnsemblBacteriaiAEB85254; AEB85254; Alide2_2906.
    GeneIDi10483954.
    KEGGiadk:Alide2_2906.
    PATRICi54528508. VBIAliDen79014_2933.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002657 Genomic DNA. Translation: AEB85254.1 .
    RefSeqi WP_013722413.1. NC_015422.1.
    YP_004388770.1. NC_015422.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB85254 ; AEB85254 ; Alide2_2906 .
    GeneIDi 10483954.
    KEGGi adk:Alide2_2906.
    PATRICi 54528508. VBIAliDen79014_2933.

    Phylogenomic databases

    KOi K06177.

    Enzyme and pathway databases

    BioCyci ADEN596154:GHU6-2938-MONOMER.

    Family and domain databases

    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    [Graphical view ]
    Pfami PF00849. PseudoU_synth_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    PROSITEi PS01129. PSI_RLU. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Alicycliphilus denitrificans K601."
      US DOE Joint Genome Institute
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Zeytun A., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Oosterkamp M.
      , Pieper D., van Berkel W., Langenhoff A., Smidt H., Stams A., Woyke T.
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 14773 / CIP 107495 / K601Imported.

    Entry informationi

    Entry nameiF4G4Y1_ALIDK
    AccessioniPrimary (citable) accession number: F4G4Y1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3