F4FEW8 (F4FEW8_VERMA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AEB43680.1
EC=6.5.1.1 EMBL AEB43680.1

Gene names

Name:	ligC EMBL AEB43680.1
Ordered Locus Names:	VAB18032_12830 EMBL AEB43680.1

Organism

Verrucosispora maris (strain AB-18-032) [Complete proteome] [HAMAP]

Taxonomic identifier

263358 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micromonosporineae › Micromonosporaceae › Verrucosispora › Verrucosispora maris

Protein attributes

Sequence length	385 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEB43680.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4FEW8 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: A94FCC9885D0EA41	FASTA	385	42,901
	10 20 30 40 50 60 MICLTVVGGV WLTVAVDLPI NPPVEPMLAR SVASIPTGPG MTYEPKWDGF RCIIFRDGDE 70 80 90 100 110 120 VELASRGGKL MTRYFPEVVE QARRQLPARC AVDGELIVIR RDSPNAAPRL DFELLAQRIH 130 140 150 160 170 180 PAASRVKLLA ETTPADFVAF DLLALDGESL LDVPYPTRRA RLEQALAKVR PPVHVTQITT 190 200 210 220 230 240 DADTARRWFD VFEGAGLDGL IAKPADLPYE PGKRLMFKVK HARTADVVVA GFRWHKSGPV 250 260 270 280 290 300 VGSLLLGLYD DAQVLHHIGV SASFTMARRA ELLEELAPYR EVGAEHPWVH GDHERGQRIP 310 320 330 340 350 360 GGVSRWTGTK NLEWEPLRPE LVVEVAYDAM EGDRFRHTAR FVRWRPDRDP LSCRYDQLDR 370 380 PVRFDVDQVL RGDPTVTVGS GTGSA

References

[1]

"Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032." Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E. J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AB-18-032 EMBL AEB43680.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002638 Genomic DNA. Translation: AEB43680.1.
RefSeq	YP_004404280.1. NC_015434.1.
3D structure databases
ProteinModelPortal	F4FEW8.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEB43680; AEB43680; VAB18032_12830.
GeneID	10450440.
KEGG	vma:VAB18032_12830.
PATRIC	54471658. VBIVerMar92278_1719.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4FEW8_VERMA

Accession

Primary (citable) accession number: F4FEW8

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)