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F4FEW8

- F4FEW8_VERMA

UniProt

F4FEW8 - F4FEW8_VERMA

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVMAR263358:GI1P-1675-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligCImported
    Ordered Locus Names:VAB18032_12830Imported
    OrganismiVerrucosispora maris (strain AB-18-032)Imported
    Taxonomic identifieri263358 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora
    ProteomesiUP000008308: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF4FEW8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4FEW8-1 [UniParc]FASTAAdd to Basket

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    MICLTVVGGV WLTVAVDLPI NPPVEPMLAR SVASIPTGPG MTYEPKWDGF    50
    RCIIFRDGDE VELASRGGKL MTRYFPEVVE QARRQLPARC AVDGELIVIR 100
    RDSPNAAPRL DFELLAQRIH PAASRVKLLA ETTPADFVAF DLLALDGESL 150
    LDVPYPTRRA RLEQALAKVR PPVHVTQITT DADTARRWFD VFEGAGLDGL 200
    IAKPADLPYE PGKRLMFKVK HARTADVVVA GFRWHKSGPV VGSLLLGLYD 250
    DAQVLHHIGV SASFTMARRA ELLEELAPYR EVGAEHPWVH GDHERGQRIP 300
    GGVSRWTGTK NLEWEPLRPE LVVEVAYDAM EGDRFRHTAR FVRWRPDRDP 350
    LSCRYDQLDR PVRFDVDQVL RGDPTVTVGS GTGSA 385
    Length:385
    Mass (Da):42,901
    Last modified:June 28, 2011 - v1
    Checksum:iA94FCC9885D0EA41
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002638 Genomic DNA. Translation: AEB43680.1.
    RefSeqiYP_004404280.1. NC_015434.1.

    Genome annotation databases

    EnsemblBacteriaiAEB43680; AEB43680; VAB18032_12830.
    GeneIDi10450440.
    KEGGivma:VAB18032_12830.
    PATRICi54471658. VBIVerMar92278_1719.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002638 Genomic DNA. Translation: AEB43680.1 .
    RefSeqi YP_004404280.1. NC_015434.1.

    3D structure databases

    ProteinModelPortali F4FEW8.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB43680 ; AEB43680 ; VAB18032_12830 .
    GeneIDi 10450440.
    KEGGi vma:VAB18032_12830.
    PATRICi 54471658. VBIVerMar92278_1719.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci VMAR263358:GI1P-1675-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
      Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
      J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: AB-18-032Imported.

    Entry informationi

    Entry nameiF4FEW8_VERMA
    AccessioniPrimary (citable) accession number: F4FEW8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3