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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1675-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligCImported
Ordered Locus Names:VAB18032_12830Imported
OrganismiVerrucosispora maris (strain AB-18-032)Imported
Taxonomic identifieri263358 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicromonosporalesMicromonosporaceaeVerrucosispora
ProteomesiUP000008308 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi263358.VAB18032_12830.

Structurei

3D structure databases

ProteinModelPortaliF4FEW8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiTIDANPA.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4FEW8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MICLTVVGGV WLTVAVDLPI NPPVEPMLAR SVASIPTGPG MTYEPKWDGF
60 70 80 90 100
RCIIFRDGDE VELASRGGKL MTRYFPEVVE QARRQLPARC AVDGELIVIR
110 120 130 140 150
RDSPNAAPRL DFELLAQRIH PAASRVKLLA ETTPADFVAF DLLALDGESL
160 170 180 190 200
LDVPYPTRRA RLEQALAKVR PPVHVTQITT DADTARRWFD VFEGAGLDGL
210 220 230 240 250
IAKPADLPYE PGKRLMFKVK HARTADVVVA GFRWHKSGPV VGSLLLGLYD
260 270 280 290 300
DAQVLHHIGV SASFTMARRA ELLEELAPYR EVGAEHPWVH GDHERGQRIP
310 320 330 340 350
GGVSRWTGTK NLEWEPLRPE LVVEVAYDAM EGDRFRHTAR FVRWRPDRDP
360 370 380
LSCRYDQLDR PVRFDVDQVL RGDPTVTVGS GTGSA
Length:385
Mass (Da):42,901
Last modified:June 28, 2011 - v1
Checksum:iA94FCC9885D0EA41
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43680.1.

Genome annotation databases

EnsemblBacteriaiAEB43680; AEB43680; VAB18032_12830.
KEGGivma:VAB18032_12830.
PATRICi54471658. VBIVerMar92278_1719.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43680.1.

3D structure databases

ProteinModelPortaliF4FEW8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi263358.VAB18032_12830.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB43680; AEB43680; VAB18032_12830.
KEGGivma:VAB18032_12830.
PATRICi54471658. VBIVerMar92278_1719.

Phylogenomic databases

OMAiTIDANPA.

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1675-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
    Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
    J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AB-18-032Imported.

Entry informationi

Entry nameiF4FEW8_VERMA
AccessioniPrimary (citable) accession number: F4FEW8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: July 22, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.