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F4FEW8 (F4FEW8_VERMA) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AEB43680.1
Gene names
Name:ligC EMBL AEB43680.1
Ordered Locus Names:VAB18032_12830 EMBL AEB43680.1
OrganismVerrucosispora maris (strain AB-18-032) [Complete proteome] [HAMAP] EMBL AEB43680.1
Taxonomic identifier263358 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora

Protein attributes

Sequence length385 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEB43680.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F4FEW8 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: A94FCC9885D0EA41

FASTA38542,901
        10         20         30         40         50         60 
MICLTVVGGV WLTVAVDLPI NPPVEPMLAR SVASIPTGPG MTYEPKWDGF RCIIFRDGDE 

        70         80         90        100        110        120 
VELASRGGKL MTRYFPEVVE QARRQLPARC AVDGELIVIR RDSPNAAPRL DFELLAQRIH 

       130        140        150        160        170        180 
PAASRVKLLA ETTPADFVAF DLLALDGESL LDVPYPTRRA RLEQALAKVR PPVHVTQITT 

       190        200        210        220        230        240 
DADTARRWFD VFEGAGLDGL IAKPADLPYE PGKRLMFKVK HARTADVVVA GFRWHKSGPV 

       250        260        270        280        290        300 
VGSLLLGLYD DAQVLHHIGV SASFTMARRA ELLEELAPYR EVGAEHPWVH GDHERGQRIP 

       310        320        330        340        350        360 
GGVSRWTGTK NLEWEPLRPE LVVEVAYDAM EGDRFRHTAR FVRWRPDRDP LSCRYDQLDR 

       370        380 
PVRFDVDQVL RGDPTVTVGS GTGSA 

« Hide

References

[1]"Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AB-18-032 EMBL AEB43680.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002638 Genomic DNA. Translation: AEB43680.1.
RefSeqYP_004404280.1. NC_015434.1.

3D structure databases

ProteinModelPortalF4FEW8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB43680; AEB43680; VAB18032_12830.
GeneID10450440.
KEGGvma:VAB18032_12830.
PATRIC54471658. VBIVerMar92278_1719.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycVMAR263358:GI1P-1675-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4FEW8_VERMA
AccessionPrimary (citable) accession number: F4FEW8
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: October 16, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)