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Protein
Submitted name:

DNA primase, small subunit

Gene

VAB18032_12780

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1665-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA primase, small subunitImported
Gene namesi
Ordered Locus Names:VAB18032_12780Imported
OrganismiVerrucosispora maris (strain AB-18-032)Imported
Taxonomic identifieri263358 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicromonosporalesMicromonosporaceaeVerrucosispora
ProteomesiUP000008308 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi263358.VAB18032_12780.

Family & Domainsi

Phylogenomic databases

OMAiTTAWWKE.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

F4FDY9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGTKAAAEE IEVAGHTVRL SSPDRVIFPK RGFTKADVFG YYLGVGDGIM
60 70 80 90 100
RALRERPTTL QRFPDGIEGE MFFSKRVPTR GVPPWVRTTE ITFPSGRTAA
110 120 130 140 150
ELCPVDLAHV AWAAQMGTVV FHPWPVRAAE PDRPDELRVD LDPQPGTDFA
160 170 180 190 200
HAATAAGELH VILDELGVPG WPKTSGGRGV HVYLRIQPRW SFVEVRRATI
210 220 230 240 250
ALARELARRR PDLVTTAWWK EERGERVFVD YNQMARDRTI ACAYSLRANA
260 270 280 290 300
RATVSTPVTW DELPDVDPDD FDLRTVPQRL AEQGDPHAGI DDAGWDITPL
310 320 330 340
LEWAERDAAA GEGDLPYPPD HPKMPGEPKR VQPSRDRDRP R
Length:341
Mass (Da):38,089
Last modified:June 28, 2011 - v1
Checksum:iC055C06BE2D116CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43670.1.
RefSeqiWP_013732338.1. NC_015434.1.

Genome annotation databases

EnsemblBacteriaiAEB43670; AEB43670; VAB18032_12780.
KEGGivma:VAB18032_12780.
PATRICi54471636. VBIVerMar92278_1708.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43670.1.
RefSeqiWP_013732338.1. NC_015434.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi263358.VAB18032_12780.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB43670; AEB43670; VAB18032_12780.
KEGGivma:VAB18032_12780.
PATRICi54471636. VBIVerMar92278_1708.

Phylogenomic databases

OMAiTTAWWKE.

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1665-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
    Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
    J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AB-18-032Imported.

Entry informationi

Entry nameiF4FDY9_VERMA
AccessioniPrimary (citable) accession number: F4FDY9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: July 22, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.