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F4FDR4 (F4FDR4_VERMA) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:VAB18032_06515 EMBL AEB42427.1
OrganismVerrucosispora maris (strain AB-18-032) [Complete proteome] [HAMAP] EMBL AEB42427.1
Taxonomic identifier263358 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora

Protein attributes

Sequence length302 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F4FDR4 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 745DFEA48A208563

FASTA30232,868
        10         20         30         40         50         60 
MTGQLPVGAG WAYEFKWDGV RALADITAGR QHLYARSGVE ITAAYPELIT LAEQVDDALL 

        70         80         90        100        110        120 
DGEVVLFDQA GRPSFTALAE RMHVRDRAKA ARLAASVPVT YMIFDLLRLR GEDLTGWPYA 

       130        140        150        160        170        180 
RRREALDDLG LGAARWAVPP VFFDGAATYS AAGEHGLEGV MAKRVDSTYR PGVRSPDWVK 

       190        200        210        220        230        240 
VKLEVTGDFV VGGWRPGARR IGGLLVGVPG AGGRLTYRGR VGGGIGAAIE RELLRELEPL 

       250        260        270        280        290        300 
RTPTSPFAAG VPREDARGAI WVTPQVVVEV KYGQRTPDGR LRFPRILRLR PDKPAEEVDD 


AS 

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References

[1]"Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AB-18-032 EMBL AEB42427.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002638 Genomic DNA. Translation: AEB42427.1.
RefSeqYP_004403027.1. NC_015434.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB42427; AEB42427; VAB18032_06515.
GeneID10449175.
KEGGvma:VAB18032_06515.
PATRIC54469063. VBIVerMar92278_0449.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycVMAR263358:GI1P-410-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4FDR4_VERMA
AccessionPrimary (citable) accession number: F4FDR4
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: February 19, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)