F4FDR4 (F4FDR4_VERMA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD ligase subunit EMBL AEB42427.1

Gene names

Ordered Locus Names:

VAB18032_06515 EMBL AEB42427.1

Organism

Verrucosispora maris (strain AB-18-032) [Complete proteome] [HAMAP] EMBL AEB42427.1

Taxonomic identifier

263358 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micromonosporineae › Micromonosporaceae › Verrucosispora › Verrucosispora maris

Protein attributes

Sequence length	302 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEB42427.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4FDR4 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 745DFEA48A208563	FASTA	302	32,868
	10 20 30 40 50 60 MTGQLPVGAG WAYEFKWDGV RALADITAGR QHLYARSGVE ITAAYPELIT LAEQVDDALL 70 80 90 100 110 120 DGEVVLFDQA GRPSFTALAE RMHVRDRAKA ARLAASVPVT YMIFDLLRLR GEDLTGWPYA 130 140 150 160 170 180 RRREALDDLG LGAARWAVPP VFFDGAATYS AAGEHGLEGV MAKRVDSTYR PGVRSPDWVK 190 200 210 220 230 240 VKLEVTGDFV VGGWRPGARR IGGLLVGVPG AGGRLTYRGR VGGGIGAAIE RELLRELEPL 250 260 270 280 290 300 RTPTSPFAAG VPREDARGAI WVTPQVVVEV KYGQRTPDGR LRFPRILRLR PDKPAEEVDD AS

References

[1]

"Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032." Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E. J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AB-18-032 EMBL AEB42427.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002638 Genomic DNA. Translation: AEB42427.1.
RefSeq	YP_004403027.1. NC_015434.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEB42427; AEB42427; VAB18032_06515.
GeneID	10449175.
KEGG	vma:VAB18032_06515.
PATRIC	54469063. VBIVerMar92278_0449.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	VMAR263358:GI1P-410-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4FDR4_VERMA

Accession

Primary (citable) accession number: F4FDR4

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	May 29, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)