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Protein
Submitted name:

DNA polymerase LigD ligase subunit

Gene

VAB18032_06515

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-410-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD ligase subunitImported
Gene namesi
Ordered Locus Names:VAB18032_06515Imported
OrganismiVerrucosispora maris (strain AB-18-032)Imported
Taxonomic identifieri263358 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora
ProteomesiUP000008308 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4FDR4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGQLPVGAG WAYEFKWDGV RALADITAGR QHLYARSGVE ITAAYPELIT
60 70 80 90 100
LAEQVDDALL DGEVVLFDQA GRPSFTALAE RMHVRDRAKA ARLAASVPVT
110 120 130 140 150
YMIFDLLRLR GEDLTGWPYA RRREALDDLG LGAARWAVPP VFFDGAATYS
160 170 180 190 200
AAGEHGLEGV MAKRVDSTYR PGVRSPDWVK VKLEVTGDFV VGGWRPGARR
210 220 230 240 250
IGGLLVGVPG AGGRLTYRGR VGGGIGAAIE RELLRELEPL RTPTSPFAAG
260 270 280 290 300
VPREDARGAI WVTPQVVVEV KYGQRTPDGR LRFPRILRLR PDKPAEEVDD

AS
Length:302
Mass (Da):32,868
Last modified:June 28, 2011 - v1
Checksum:i745DFEA48A208563
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB42427.1.
RefSeqiYP_004403027.1. NC_015434.1.

Genome annotation databases

EnsemblBacteriaiAEB42427; AEB42427; VAB18032_06515.
KEGGivma:VAB18032_06515.
PATRICi54469063. VBIVerMar92278_0449.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB42427.1.
RefSeqiYP_004403027.1. NC_015434.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB42427; AEB42427; VAB18032_06515.
KEGGivma:VAB18032_06515.
PATRICi54469063. VBIVerMar92278_0449.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-410-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
    Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
    J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AB-18-032Imported.

Entry informationi

Entry nameiF4FDR4_VERMA
AccessioniPrimary (citable) accession number: F4FDR4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 29, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.