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F4F7C2

- F4F7C2_VERMA

UniProt

F4F7C2 - F4F7C2_VERMA

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Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain-containing protein

Gene
VAB18032_10310
Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1168-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D, 3'-phosphoesterase domain-containing proteinImported
Gene namesi
Ordered Locus Names:VAB18032_10310Imported
OrganismiVerrucosispora maris (strain AB-18-032)Imported
Taxonomic identifieri263358 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora
ProteomesiUP000008308: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4F7C2.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4F7C2-1 [UniParc]FASTAAdd to Basket

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MADRLEEYRR KRDATRTPEP VPAERRRRRS GGDRRRFVIQ QHHARSLHWD    50
LRLEHDGVLA SWAVPRGLPR EPGRNHLAVH TEDHPMEYLD FAGEIPAGEY 100
GGGQMIIHDR GTYHCEKWQE REVVVDLRGD RTAGRYVLFA TGGRDGRDWM 150
VRRTDPAPPG WTSMPDLVAP MHTTSATRLP NDPANWGYEL SWDGVRAVAY 200
VSGGRLRLLS ATGEDITGEY SWLRPMAETL APTEAVLDGV LVRIDRAGRV 250
RPARGGRGTT DAQYLLVDLL WLEGSTSTDL PYRQRRELLE ALALTGPHWQ 300
TPPWFPGSGA EARHTAREQG LPGVIAKRLD SVYEPGRRSR AWRRIEAS 348
Length:348
Mass (Da):39,421
Last modified:June 28, 2011 - v1
Checksum:iAC979053828916E4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002638 Genomic DNA. Translation: AEB43180.1.
RefSeqiYP_004403780.1. NC_015434.1.

Genome annotation databases

EnsemblBacteriaiAEB43180; AEB43180; VAB18032_10310.
GeneIDi10449933.
KEGGivma:VAB18032_10310.
PATRICi54470608. VBIVerMar92278_1207.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002638 Genomic DNA. Translation: AEB43180.1 .
RefSeqi YP_004403780.1. NC_015434.1.

3D structure databases

ProteinModelPortali F4F7C2.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEB43180 ; AEB43180 ; VAB18032_10310 .
GeneIDi 10449933.
KEGGi vma:VAB18032_10310.
PATRICi 54470608. VBIVerMar92278_1207.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci VMAR263358:GI1P-1168-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
    Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
    J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AB-18-032Imported.

Entry informationi

Entry nameiF4F7C2_VERMA
AccessioniPrimary (citable) accession number: F4F7C2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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