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Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain-containing protein

Gene

VAB18032_10310

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1168-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D, 3'-phosphoesterase domain-containing proteinImported
Gene namesi
Ordered Locus Names:VAB18032_10310Imported
OrganismiVerrucosispora maris (strain AB-18-032)Imported
Taxonomic identifieri263358 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora
ProteomesiUP000008308 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4F7C2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4F7C2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADRLEEYRR KRDATRTPEP VPAERRRRRS GGDRRRFVIQ QHHARSLHWD
60 70 80 90 100
LRLEHDGVLA SWAVPRGLPR EPGRNHLAVH TEDHPMEYLD FAGEIPAGEY
110 120 130 140 150
GGGQMIIHDR GTYHCEKWQE REVVVDLRGD RTAGRYVLFA TGGRDGRDWM
160 170 180 190 200
VRRTDPAPPG WTSMPDLVAP MHTTSATRLP NDPANWGYEL SWDGVRAVAY
210 220 230 240 250
VSGGRLRLLS ATGEDITGEY SWLRPMAETL APTEAVLDGV LVRIDRAGRV
260 270 280 290 300
RPARGGRGTT DAQYLLVDLL WLEGSTSTDL PYRQRRELLE ALALTGPHWQ
310 320 330 340
TPPWFPGSGA EARHTAREQG LPGVIAKRLD SVYEPGRRSR AWRRIEAS
Length:348
Mass (Da):39,421
Last modified:June 27, 2011 - v1
Checksum:iAC979053828916E4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43180.1.
RefSeqiYP_004403780.1. NC_015434.1.

Genome annotation databases

EnsemblBacteriaiAEB43180; AEB43180; VAB18032_10310.
GeneIDi10449933.
KEGGivma:VAB18032_10310.
PATRICi54470608. VBIVerMar92278_1207.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43180.1.
RefSeqiYP_004403780.1. NC_015434.1.

3D structure databases

ProteinModelPortaliF4F7C2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB43180; AEB43180; VAB18032_10310.
GeneIDi10449933.
KEGGivma:VAB18032_10310.
PATRICi54470608. VBIVerMar92278_1207.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1168-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
    Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
    J. Bacteriol. 193:3391-3392(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AB-18-032Imported.

Entry informationi

Entry nameiF4F7C2_VERMA
AccessioniPrimary (citable) accession number: F4F7C2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 27, 2011
Last sequence update: June 27, 2011
Last modified: January 6, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.