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F4F7C2 (F4F7C2_VERMA) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D, 3'-phosphoesterase domain-containing protein EMBL AEB43180.1
Gene names
Ordered Locus Names:VAB18032_10310 EMBL AEB43180.1
OrganismVerrucosispora maris (strain AB-18-032) [Complete proteome] [HAMAP]
Taxonomic identifier263358 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micromonosporineae › Micromonosporaceae › Verrucosispora ›

Protein attributes

Sequence length348 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEB43180.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F4F7C2 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: AC979053828916E4

FASTA34839,421
        10         20         30         40         50         60 
MADRLEEYRR KRDATRTPEP VPAERRRRRS GGDRRRFVIQ QHHARSLHWD LRLEHDGVLA 

        70         80         90        100        110        120 
SWAVPRGLPR EPGRNHLAVH TEDHPMEYLD FAGEIPAGEY GGGQMIIHDR GTYHCEKWQE 

       130        140        150        160        170        180 
REVVVDLRGD RTAGRYVLFA TGGRDGRDWM VRRTDPAPPG WTSMPDLVAP MHTTSATRLP 

       190        200        210        220        230        240 
NDPANWGYEL SWDGVRAVAY VSGGRLRLLS ATGEDITGEY SWLRPMAETL APTEAVLDGV 

       250        260        270        280        290        300 
LVRIDRAGRV RPARGGRGTT DAQYLLVDLL WLEGSTSTDL PYRQRRELLE ALALTGPHWQ 

       310        320        330        340 
TPPWFPGSGA EARHTAREQG LPGVIAKRLD SVYEPGRRSR AWRRIEAS

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References

[1]"Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AB-18-032 EMBL AEB43180.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002638 Genomic DNA. Translation: AEB43180.1.
RefSeqYP_004403780.1. NC_015434.1.

3D structure databases

ProteinModelPortalF4F7C2.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB43180; AEB43180; VAB18032_10310.
GeneID10449933.
KEGGvma:VAB18032_10310.
PATRIC54470608. VBIVerMar92278_1207.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4F7C2_VERMA
AccessionPrimary (citable) accession number: F4F7C2
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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