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Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain-containing protein

Gene

VAB18032_10310

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1168-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D, 3'-phosphoesterase domain-containing proteinImported
Gene namesi
Ordered Locus Names:VAB18032_10310Imported
OrganismiVerrucosispora maris (strain AB-18-032)Imported
Taxonomic identifieri263358 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicromonosporalesMicromonosporaceaeVerrucosispora
Proteomesi
  • UP000008308 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi263358.VAB18032_10310.

Structurei

3D structure databases

ProteinModelPortaliF4F7C2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini264 – 348DNA_LIGASE_A3InterPro annotationAdd BLAST85

Phylogenomic databases

eggNOGiENOG4107TKW. Bacteria.
COG1793. LUCA.
KOiK01971.
OMAiGPHWQTP.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiView protein in InterPro
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
PfamiView protein in Pfam
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
PROSITEiView protein in PROSITE
PS50160. DNA_LIGASE_A3. 1 hit.

Sequencei

Sequence statusi: Complete.

F4F7C2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADRLEEYRR KRDATRTPEP VPAERRRRRS GGDRRRFVIQ QHHARSLHWD
60 70 80 90 100
LRLEHDGVLA SWAVPRGLPR EPGRNHLAVH TEDHPMEYLD FAGEIPAGEY
110 120 130 140 150
GGGQMIIHDR GTYHCEKWQE REVVVDLRGD RTAGRYVLFA TGGRDGRDWM
160 170 180 190 200
VRRTDPAPPG WTSMPDLVAP MHTTSATRLP NDPANWGYEL SWDGVRAVAY
210 220 230 240 250
VSGGRLRLLS ATGEDITGEY SWLRPMAETL APTEAVLDGV LVRIDRAGRV
260 270 280 290 300
RPARGGRGTT DAQYLLVDLL WLEGSTSTDL PYRQRRELLE ALALTGPHWQ
310 320 330 340
TPPWFPGSGA EARHTAREQG LPGVIAKRLD SVYEPGRRSR AWRRIEAS
Length:348
Mass (Da):39,421
Last modified:June 28, 2011 - v1
Checksum:iAC979053828916E4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43180.1.
RefSeqiWP_013731851.1. NC_015434.1.

Genome annotation databases

EnsemblBacteriaiAEB43180; AEB43180; VAB18032_10310.
KEGGivma:VAB18032_10310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB43180.1.
RefSeqiWP_013731851.1. NC_015434.1.

3D structure databases

ProteinModelPortaliF4F7C2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi263358.VAB18032_10310.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB43180; AEB43180; VAB18032_10310.
KEGGivma:VAB18032_10310.

Phylogenomic databases

eggNOGiENOG4107TKW. Bacteria.
COG1793. LUCA.
KOiK01971.
OMAiGPHWQTP.
OrthoDBiPOG091H0AZ9.

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-1168-MONOMER.

Family and domain databases

InterProiView protein in InterPro
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
PfamiView protein in Pfam
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
PROSITEiView protein in PROSITE
PS50160. DNA_LIGASE_A3. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiF4F7C2_VERMA
AccessioniPrimary (citable) accession number: F4F7C2
Entry historyiIntegrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 7, 2017
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.