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F4F7C2

- F4F7C2_VERMA

UniProt

F4F7C2 - F4F7C2_VERMA

Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain-containing protein

Gene

VAB18032_10310

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVMAR263358:GI1P-1168-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase D, 3'-phosphoesterase domain-containing proteinImported
    Gene namesi
    Ordered Locus Names:VAB18032_10310Imported
    OrganismiVerrucosispora maris (strain AB-18-032)Imported
    Taxonomic identifieri263358 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora
    ProteomesiUP000008308: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF4F7C2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR014144. LigD_PE_domain.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4F7C2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MADRLEEYRR KRDATRTPEP VPAERRRRRS GGDRRRFVIQ QHHARSLHWD    50
    LRLEHDGVLA SWAVPRGLPR EPGRNHLAVH TEDHPMEYLD FAGEIPAGEY 100
    GGGQMIIHDR GTYHCEKWQE REVVVDLRGD RTAGRYVLFA TGGRDGRDWM 150
    VRRTDPAPPG WTSMPDLVAP MHTTSATRLP NDPANWGYEL SWDGVRAVAY 200
    VSGGRLRLLS ATGEDITGEY SWLRPMAETL APTEAVLDGV LVRIDRAGRV 250
    RPARGGRGTT DAQYLLVDLL WLEGSTSTDL PYRQRRELLE ALALTGPHWQ 300
    TPPWFPGSGA EARHTAREQG LPGVIAKRLD SVYEPGRRSR AWRRIEAS 348
    Length:348
    Mass (Da):39,421
    Last modified:June 28, 2011 - v1
    Checksum:iAC979053828916E4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002638 Genomic DNA. Translation: AEB43180.1.
    RefSeqiYP_004403780.1. NC_015434.1.

    Genome annotation databases

    EnsemblBacteriaiAEB43180; AEB43180; VAB18032_10310.
    GeneIDi10449933.
    KEGGivma:VAB18032_10310.
    PATRICi54470608. VBIVerMar92278_1207.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002638 Genomic DNA. Translation: AEB43180.1 .
    RefSeqi YP_004403780.1. NC_015434.1.

    3D structure databases

    ProteinModelPortali F4F7C2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB43180 ; AEB43180 ; VAB18032_10310 .
    GeneIDi 10449933.
    KEGGi vma:VAB18032_10310.
    PATRICi 54470608. VBIVerMar92278_1207.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci VMAR263358:GI1P-1168-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014144. LigD_PE_domain.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
      Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
      J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: AB-18-032Imported.

    Entry informationi

    Entry nameiF4F7C2_VERMA
    AccessioniPrimary (citable) accession number: F4F7C2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3