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Protein

Alpha-amylase

Gene

VAB18032_27951

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-4672-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VAB18032_27951Imported
OrganismiVerrucosispora maris (strain AB-18-032)Imported
Taxonomic identifieri263358 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicromonosporalesMicromonosporaceaeVerrucosispora
Proteomesi
  • UP000008308 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3535Sequence analysisAdd
BLAST
Chaini36 – 727692Alpha-amylaseSequence analysisPRO_5003309080Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi263358.VAB18032_27951.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini526 – 631106CBM20 (carbohydrate binding type-20)InterPro annotationAdd
BLAST
Domaini629 – 72799CBM20 (carbohydrate binding type-20)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotationSAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E54. Bacteria.
COG0366. LUCA.
KOiK01176.
OMAiSSAWICE.
OrthoDBiPOG091H0CDS.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase/branching_C.
IPR031319. A-amylase_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 2 hits.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 2 hits.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4F417-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVPRPRAAI PAALAATLVA ASLTVVATTT APASAAEVRA NGDAIVHLFQ
60 70 80 90 100
WRWDSIAEEC ETNLGPNGWG GVQVSPPQEH VVLPSAEGAT YPWWQDYQPV
110 120 130 140 150
SYRLDATRRG SKAQFVDMVE RCRAQGVKIY VDMVLNHMSG TGSANSGPGS
160 170 180 190 200
AGTVYSKYSY PNLFNDGSGD SYGYADFGPC YRKINNWGNK QEVQDCELLD
210 220 230 240 250
LADLNTADPE VRRKIAKYMN AVIDLGVAGF RVDAAKHVQE SHLADIINRL
260 270 280 290 300
RDVPGFGGRP DLFHEVYGDG TIPYTAYAPY GGVTNFDYQR SVSSAFRDGN
310 320 330 340 350
IAQLGNLPNY GGLTGQQAVV FIDNHDTQRE TPTLTYKNGA RYYLADTFMM
360 370 380 390 400
AHPYGRPQLM SSYAFGSVHG QGPPSASNGT TLATDCTSSA WICEHRDAGV
410 420 430 440 450
AGMPGFRNAV AGTGIASVVT DGNGRLAFAR GNRGYAAFNA TGSTWSRSFS
460 470 480 490 500
TSLPDGRYCN VGRGAYDRST GACPGGAVTV SGGSFSAAIP ADQAVALHVE
510 520 530 540 550
ARLDGPTPTA SPTVTPTASP TASPTPTASP TQPAGSTRFT ATVTTNPGQE
560 570 580 590 600
VYVVGSIPQL GSWNPANGVK LSTTSGSYPT WSGAVDVPAG TAFEWKLVKV
610 620 630 640 650
GNGVQWENDP NRTGTGGTAF TVTWNQPATN PPGEATVSFQ ATASTTYGQH
660 670 680 690 700
IYVVGDLPAL GGWDPAKGVR LSPTAYPVWT GQLSLPAGTA FSYKYVKRTD
710 720
SGQVVWESGT NRTATASGSV TLTDTWR
Length:727
Mass (Da):76,859
Last modified:June 28, 2011 - v1
Checksum:iDB96FC9437B10B56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB46663.1.
RefSeqiWP_013735313.1. NC_015434.1.

Genome annotation databases

EnsemblBacteriaiAEB46663; AEB46663; VAB18032_27951.
KEGGivma:VAB18032_27951.
PATRICi54477734. VBIVerMar92278_4724.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002638 Genomic DNA. Translation: AEB46663.1.
RefSeqiWP_013735313.1. NC_015434.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi263358.VAB18032_27951.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB46663; AEB46663; VAB18032_27951.
KEGGivma:VAB18032_27951.
PATRICi54477734. VBIVerMar92278_4724.

Phylogenomic databases

eggNOGiENOG4105E54. Bacteria.
COG0366. LUCA.
KOiK01176.
OMAiSSAWICE.
OrthoDBiPOG091H0CDS.

Enzyme and pathway databases

BioCyciVMAR263358:GI1P-4672-MONOMER.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase/branching_C.
IPR031319. A-amylase_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 2 hits.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 2 hits.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF4F417_VERMA
AccessioniPrimary (citable) accession number: F4F417
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 7, 2016
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.