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F4F417

- F4F417_VERMA

UniProt

F4F417 - F4F417_VERMA

Protein

Alpha-amylase

Gene

VAB18032_27951

Organism
Verrucosispora maris (strain AB-18-032)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro
    3. starch binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Enzyme and pathway databases

    BioCyciVMAR263358:GI1P-4672-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:VAB18032_27951Imported
    OrganismiVerrucosispora maris (strain AB-18-032)Imported
    Taxonomic identifieri263358 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeVerrucosispora
    ProteomesiUP000008308: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    KOiK01176.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR013784. Carb-bd-like_fold.
    IPR002044. CBM_fam20.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF00686. CBM_20. 2 hits.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SMARTiSM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    SM01065. CBM_2. 2 hits.
    [Graphical view]
    SUPFAMiSSF49452. SSF49452. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEiPS51166. CBM20. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4F417-1 [UniParc]FASTAAdd to Basket

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    MRVPRPRAAI PAALAATLVA ASLTVVATTT APASAAEVRA NGDAIVHLFQ    50
    WRWDSIAEEC ETNLGPNGWG GVQVSPPQEH VVLPSAEGAT YPWWQDYQPV 100
    SYRLDATRRG SKAQFVDMVE RCRAQGVKIY VDMVLNHMSG TGSANSGPGS 150
    AGTVYSKYSY PNLFNDGSGD SYGYADFGPC YRKINNWGNK QEVQDCELLD 200
    LADLNTADPE VRRKIAKYMN AVIDLGVAGF RVDAAKHVQE SHLADIINRL 250
    RDVPGFGGRP DLFHEVYGDG TIPYTAYAPY GGVTNFDYQR SVSSAFRDGN 300
    IAQLGNLPNY GGLTGQQAVV FIDNHDTQRE TPTLTYKNGA RYYLADTFMM 350
    AHPYGRPQLM SSYAFGSVHG QGPPSASNGT TLATDCTSSA WICEHRDAGV 400
    AGMPGFRNAV AGTGIASVVT DGNGRLAFAR GNRGYAAFNA TGSTWSRSFS 450
    TSLPDGRYCN VGRGAYDRST GACPGGAVTV SGGSFSAAIP ADQAVALHVE 500
    ARLDGPTPTA SPTVTPTASP TASPTPTASP TQPAGSTRFT ATVTTNPGQE 550
    VYVVGSIPQL GSWNPANGVK LSTTSGSYPT WSGAVDVPAG TAFEWKLVKV 600
    GNGVQWENDP NRTGTGGTAF TVTWNQPATN PPGEATVSFQ ATASTTYGQH 650
    IYVVGDLPAL GGWDPAKGVR LSPTAYPVWT GQLSLPAGTA FSYKYVKRTD 700
    SGQVVWESGT NRTATASGSV TLTDTWR 727
    Length:727
    Mass (Da):76,859
    Last modified:June 28, 2011 - v1
    Checksum:iDB96FC9437B10B56
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002638 Genomic DNA. Translation: AEB46663.1.
    RefSeqiYP_004407263.1. NC_015434.1.

    Genome annotation databases

    EnsemblBacteriaiAEB46663; AEB46663; VAB18032_27951.
    GeneIDi10453436.
    KEGGivma:VAB18032_27951.
    PATRICi54477734. VBIVerMar92278_4724.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002638 Genomic DNA. Translation: AEB46663.1 .
    RefSeqi YP_004407263.1. NC_015434.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB46663 ; AEB46663 ; VAB18032_27951 .
    GeneIDi 10453436.
    KEGGi vma:VAB18032_27951.
    PATRICi 54477734. VBIVerMar92278_4724.

    Phylogenomic databases

    KOi K01176.

    Enzyme and pathway databases

    BioCyci VMAR263358:GI1P-4672-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR013784. Carb-bd-like_fold.
    IPR002044. CBM_fam20.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF00686. CBM_20. 2 hits.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SMARTi SM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    SM01065. CBM_2. 2 hits.
    [Graphical view ]
    SUPFAMi SSF49452. SSF49452. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEi PS51166. CBM20. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032."
      Roh H., Uguru G.C., Ko H.J., Kim S., Kim B.Y., Goodfellow M., Bull A.T., Kim K.H., Bibb M.J., Choi I.G., Stach J.E.
      J. Bacteriol. 193:3391-3392(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: AB-18-032Imported.

    Entry informationi

    Entry nameiF4F417_VERMA
    AccessioniPrimary (citable) accession number: F4F417
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3