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F4EIX8

- F4EIX8_BACAM

UniProt

F4EIX8 - F4EIX8_BACAM

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Protein
Isocitrate dehydrogenase [NADP]
Gene
icd, LL3_03001
Organism
Bacillus amyloliquefaciens LL3
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH.UniRule annotation

Cofactori

Binds 1 magnesium or manganese ion per subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. NAD binding Source: InterPro
  2. isocitrate dehydrogenase (NADP+) activity Source: UniProtKB-EC
  3. magnesium ion binding Source: InterPro

GO - Biological processi

  1. glyoxylate cycle Source: UniProtKB-KW
  2. tricarboxylic acid cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Biological processi

Glyoxylate bypassUniRule annotation, Tricarboxylic acid cycleUniRule annotation

Keywords - Ligandi

ManganeseUniRule annotation, Metal-bindingUniRule annotation, NADPUniRule annotation

Enzyme and pathway databases

BioCyciBAMY1001582:GL8C-3065-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Isocitrate dehydrogenase [NADP]UniRule annotation (EC:1.1.1.42UniRule annotation)
Gene namesi
Name:icdImported
ORF Names:LL3_03001Imported
OrganismiBacillus amyloliquefaciens LL3Imported
Taxonomic identifieri1001582 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000000308: Chromosome

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK00031.

Family and domain databases

Gene3Di3.40.718.10. 1 hit.
InterProiIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR004439. Isocitrate_DH_NADP_dimer_prok.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERiPTHR11835. PTHR11835. 1 hit.
PfamiPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00183. prok_nadp_idh. 1 hit.
PROSITEiPS00470. IDH_IMDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4EIX8-1 [UniParc]FASTAAdd to Basket

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MSQGEKITVS NGVLNVPNNP IIPFIEGDGT GPDIWNAASK VLEAAVEKAY    50
KGEKKITWKE VYAGEKAYNK TGEWLPAQTL EDIREYFIAI KGPLTTPVGG 100
GIRSLNVALR QELDLFTCLR PVRYFTGVPS PVKRPEDTDM VIFRENTEDI 150
YAGIEYAKGS EEVEKLISFL QNEMGVNKIR FPETSGIGIK PVSEEGTSRL 200
VRAAIEYAIE NGRKSVTLVH KGNIMKFTEG AFKNWGYELA EREYGDKVFT 250
WAEYDRIVEK DGKEAADKAQ SEAEAAGKII VKDSIADIFL QQILTRPSEF 300
DVVATMNLNG DYISDALAAQ VGGIGIAPGA NINYETGHAI FEATHGTAPK 350
YAGLDKVNPS SVILSGVLLL EHLNWNEAAD LIIKSMEKTI ASKVVTYDFA 400
RLMDGATEVK CSEFGEELIK NMD 423
Length:423
Mass (Da):46,506
Last modified:June 28, 2011 - v1
Checksum:i39F4AAA75CAA3C4C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002634 Genomic DNA. Translation: AEB64532.1.
RefSeqiWP_013353156.1. NC_017190.1.
YP_005546760.1. NC_017190.1.

Genome annotation databases

EnsemblBacteriaiAEB64532; AEB64532; LL3_03001.
GeneIDi12202087.
KEGGibql:LL3_03001.
PATRICi54318218. VBIBacAmy188832_2943.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002634 Genomic DNA. Translation: AEB64532.1 .
RefSeqi WP_013353156.1. NC_017190.1.
YP_005546760.1. NC_017190.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEB64532 ; AEB64532 ; LL3_03001 .
GeneIDi 12202087.
KEGGi bql:LL3_03001.
PATRICi 54318218. VBIBacAmy188832_2943.

Phylogenomic databases

KOi K00031.

Enzyme and pathway databases

BioCyci BAMY1001582:GL8C-3065-MONOMER.

Family and domain databases

Gene3Di 3.40.718.10. 1 hit.
InterProi IPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR004439. Isocitrate_DH_NADP_dimer_prok.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view ]
PANTHERi PTHR11835. PTHR11835. 1 hit.
Pfami PF00180. Iso_dh. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00183. prok_nadp_idh. 1 hit.
PROSITEi PS00470. IDH_IMDH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of Bacillus amyloliquefaciens LL3, Which Exhibits Glutamic Acid-Independent Production of Poly-{gamma}-Glutamic Acid."
    Geng W., Cao M., Song C., Xie H., Liu L., Yang C., Feng J., Zhang W., Jin Y., Du Y., Wang S.
    J. Bacteriol. 193:3393-3394(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LL3Imported.

Entry informationi

Entry nameiF4EIX8_BACAM
AccessioniPrimary (citable) accession number: F4EIX8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 3, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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