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F4EIX8

- F4EIX8_BACAM

UniProt

F4EIX8 - F4EIX8_BACAM

Protein

Isocitrate dehydrogenase [NADP]

Gene

icd

Organism
Bacillus amyloliquefaciens LL3
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH.

    Cofactori

    Binds 1 magnesium or manganese ion per subunit.UniRule annotation

    GO - Molecular functioni

    1. isocitrate dehydrogenase (NADP+) activity Source: UniProtKB-EC
    2. magnesium ion binding Source: InterPro
    3. NAD binding Source: InterPro

    GO - Biological processi

    1. glyoxylate cycle Source: UniProtKB-KW
    2. tricarboxylic acid cycle Source: UniProtKB-KW

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Biological processi

    Glyoxylate bypassUniRule annotation, Tricarboxylic acid cycleUniRule annotation

    Keywords - Ligandi

    ManganeseUniRule annotation, Metal-bindingUniRule annotation, NADPUniRule annotation

    Enzyme and pathway databases

    BioCyciBAMY1001582:GL8C-3065-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Isocitrate dehydrogenase [NADP]UniRule annotation (EC:1.1.1.42UniRule annotation)
    Gene namesi
    Name:icdImported
    ORF Names:LL3_03001Imported
    OrganismiBacillus amyloliquefaciens LL3Imported
    Taxonomic identifieri1001582 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000000308: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the isocitrate and isopropylmalate dehydrogenases family.UniRule annotation

    Phylogenomic databases

    KOiK00031.

    Family and domain databases

    Gene3Di3.40.718.10. 1 hit.
    InterProiIPR019818. IsoCit/isopropylmalate_DH_CS.
    IPR001804. Isocitrate/isopropylmalate_DH.
    IPR004439. Isocitrate_DH_NADP_dimer_prok.
    IPR024084. IsoPropMal-DH-like_dom.
    [Graphical view]
    PANTHERiPTHR11835. PTHR11835. 1 hit.
    PfamiPF00180. Iso_dh. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00183. prok_nadp_idh. 1 hit.
    PROSITEiPS00470. IDH_IMDH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4EIX8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSQGEKITVS NGVLNVPNNP IIPFIEGDGT GPDIWNAASK VLEAAVEKAY    50
    KGEKKITWKE VYAGEKAYNK TGEWLPAQTL EDIREYFIAI KGPLTTPVGG 100
    GIRSLNVALR QELDLFTCLR PVRYFTGVPS PVKRPEDTDM VIFRENTEDI 150
    YAGIEYAKGS EEVEKLISFL QNEMGVNKIR FPETSGIGIK PVSEEGTSRL 200
    VRAAIEYAIE NGRKSVTLVH KGNIMKFTEG AFKNWGYELA EREYGDKVFT 250
    WAEYDRIVEK DGKEAADKAQ SEAEAAGKII VKDSIADIFL QQILTRPSEF 300
    DVVATMNLNG DYISDALAAQ VGGIGIAPGA NINYETGHAI FEATHGTAPK 350
    YAGLDKVNPS SVILSGVLLL EHLNWNEAAD LIIKSMEKTI ASKVVTYDFA 400
    RLMDGATEVK CSEFGEELIK NMD 423
    Length:423
    Mass (Da):46,506
    Last modified:June 28, 2011 - v1
    Checksum:i39F4AAA75CAA3C4C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002634 Genomic DNA. Translation: AEB64532.1.
    RefSeqiWP_013353156.1. NC_017190.1.
    YP_005546760.1. NC_017190.1.

    Genome annotation databases

    EnsemblBacteriaiAEB64532; AEB64532; LL3_03001.
    GeneIDi12202087.
    KEGGibql:LL3_03001.
    PATRICi54318218. VBIBacAmy188832_2943.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002634 Genomic DNA. Translation: AEB64532.1 .
    RefSeqi WP_013353156.1. NC_017190.1.
    YP_005546760.1. NC_017190.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB64532 ; AEB64532 ; LL3_03001 .
    GeneIDi 12202087.
    KEGGi bql:LL3_03001.
    PATRICi 54318218. VBIBacAmy188832_2943.

    Phylogenomic databases

    KOi K00031.

    Enzyme and pathway databases

    BioCyci BAMY1001582:GL8C-3065-MONOMER.

    Family and domain databases

    Gene3Di 3.40.718.10. 1 hit.
    InterProi IPR019818. IsoCit/isopropylmalate_DH_CS.
    IPR001804. Isocitrate/isopropylmalate_DH.
    IPR004439. Isocitrate_DH_NADP_dimer_prok.
    IPR024084. IsoPropMal-DH-like_dom.
    [Graphical view ]
    PANTHERi PTHR11835. PTHR11835. 1 hit.
    Pfami PF00180. Iso_dh. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00183. prok_nadp_idh. 1 hit.
    PROSITEi PS00470. IDH_IMDH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of Bacillus amyloliquefaciens LL3, Which Exhibits Glutamic Acid-Independent Production of Poly-{gamma}-Glutamic Acid."
      Geng W., Cao M., Song C., Xie H., Liu L., Yang C., Feng J., Zhang W., Jin Y., Du Y., Wang S.
      J. Bacteriol. 193:3393-3394(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: LL3Imported.

    Entry informationi

    Entry nameiF4EIX8_BACAM
    AccessioniPrimary (citable) accession number: F4EIX8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3