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F4DY83 (F4DY83_PSEMN) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA helicase/exodeoxyribonuclease V, gamma subunit EMBL AEB58803.1
Gene names
Ordered Locus Names:MDS_2772 EMBL AEB58803.1
OrganismPseudomonas mendocina (strain NK-01) [Complete proteome] [HAMAP]
Taxonomic identifier1001585 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length1138 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   LigandATP-binding
Nucleotide-binding
   Molecular functionHelicase EMBL AEB58803.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentexodeoxyribonuclease V complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionexodeoxyribonuclease V activity

Inferred from electronic annotation. Source: InterPro

helicase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F4DY83 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 17EA14FA199DFF7F

FASTA1,138128,159
        10         20         30         40         50         60 
MPASPELSPG LIVIHGNHLE ELRTLAVQWM RRYPLRPLEN EVLLVQSNGI AQWLKLALAE 

        70         80         90        100        110        120 
RDGCGIAAAL DVDLPARFLW QAYRNVLGKD AIPQQSPLDK APLTWRLMRL LPGLLAEEAF 

       130        140        150        160        170        180 
APLRRFLADD QDLRKRHQLA ERLADLFDQY QVYRADWLAD WAAAHDRLRT SRGGERILDD 

       190        200        210        220        230        240 
DSRWQPALWR ALLADVGEQH LAESRAGVHP RFVARMGELD AAPPGLPRRI TVFGISSLPA 

       250        260        270        280        290        300 
QVLEALAAMA RFSQVMLYVH NPCQHHWGDI VEDKDLLRHE YRRQQRKGKP SAQIGLFEQE 

       310        320        330        340        350        360 
DMHQHGQPLL AAWGKQGRDY INLLDQYDEP QRYREQFERI DLFSPASECC LLGQLQNDIL 

       370        380        390        400        410        420 
DLRPLADTRS TWPPVDPARD HSLRFHVAHS AQREVEVLHD QLLASFSEDS TLRPRDVIVM 

       430        440        450        460        470        480 
VPDVNAYAPH IQAVFGQFAS DDPRFIPFTL ADQGLRGKEP MVIALEHLLR LPDSRFSVSE 

       490        500        510        520        530        540 
ILDLLDVAAL RERFAIAEDQ LPTLRRWLEG AGVRWGLDAS QRQSLGLGEN LEQNTWRFGL 

       550        560        570        580        590        600 
RRMLLGYAVG KADAFAGIEP YDEIGGLDAA LIGPVTRLLE TLDQHLQLMR EPTTPVQWGE 

       610        620        630        640        650        660 
RLRSLLDGFF LAQNDREEVL TTQLLDALDA WLELCEAATL DEALTLPVVR EAWLGGLDQG 

       670        680        690        700        710        720 
RLSQRFLAGA VNFCTLMPMR AIPFRQVCLL GMNDGDYPRS QAPLDFDLMA GDYRPGDRSR 

       730        740        750        760        770        780 
REDDRYLLLE ALLAARDRLY ISWVGRSIRD NSERPPSVLV GQLRDHLASA WTLAGGGDLL 

       790        800        810        820        830        840 
HGLTTEHPLQ PFSRRYFDGE AQLFSYAREW AALHGHALAG ENFVAPLPAW EEGRQLTPEL 

       850        860        870        880        890        900 
LQSFLRDPVK CFFTRRLKVF LDEDEQAQLD SEPFALDGLQ RYQLQETLLK AAVAGDVDSD 

       910        920        930        940        950        960 
DALRAAADRL QRSGVLPLAG FGEQYRNALL EPLPAQLRRY QGLCLCWPTP VESPQRLLFS 

       970        980        990       1000       1010       1020 
AAGVDLDGWL AGLRQKADGS LARLELLPGA LHKDKSWKWH RLLRPYVLHV IAAACGVPLT 

      1030       1040       1050       1060       1070       1080 
TLLVGEDRSL VFDPLPAEHA AHVLTAWLEA WNLGMQSPLP VALKTSLTWL QDNNEDKASS 

      1090       1100       1110       1120       1130 
VYEGGYNLTG EVQGSASLAR QFPDYSALSA DGQFPAWSER LYQPLLDSHP QALEEDAA

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References

[1]"Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NK-01 EMBL AEB58803.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002620 Genomic DNA. Translation: AEB58803.1.
RefSeqYP_004380555.1. NC_015410.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB58803; AEB58803; MDS_2772.
GeneID10457554.
KEGGpmk:MDS_2772.
PATRIC54486255. VBIPseMen187712_2822.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK03583.

Enzyme and pathway databases

BioCycPMEN1001585:GIWS-2810-MONOMER.

Family and domain databases

Gene3D1.10.10.160. 1 hit.
InterProIPR013986. DExx_box_DNA_helicase_dom.
IPR006697. ExoDNase_V_gsu.
IPR011335. Restrct_endonuc-II-like.
[Graphical view]
PIRSFPIRSF000980. RecC. 1 hit.
SUPFAMSSF52980. Restrict_endonuc_II-like_core. 1 hit.
TIGRFAMsTIGR01450. recC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF4DY83_PSEMN
AccessionPrimary (citable) accession number: F4DY83
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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