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F4DUS8

- F4DUS8_PSEMN

UniProt

F4DUS8 - F4DUS8_PSEMN

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

MDS_2516

Organism
Pseudomonas mendocina (strain NK-01)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPMEN1001585:GIWS-2548-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:MDS_2516Imported
    OrganismiPseudomonas mendocina (strain NK-01)Imported
    Taxonomic identifieri1001585 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000008306: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiKHAKPAL.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4DUS8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ    50
    IVPTRVLREL ATQLSGLSDW LFEESYQTVG DLAETIALLL PDSQHVSDQG 100
    LAWWLEEQLL PLRGLPPAEL AERLPPLWAQ LDRESLMVSL KLLTGAFRVG 150
    VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD LSHRPTTQRY LALIAAESED 200
    EHAQRGGQPY PFFLAHPLQQ PLEQFDAVLG AASDWLVEWK WDGIRAQLVK 250
    RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 300
    AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ 350
    DERRARLELL VAEVGDGRLQ LSPQLTGSDW QDFARQREAS RELGVEGMML 400
    KRRDSLYGVG RTRDLGLWWK WKIDPFSVDA VLIYAQRGHG RRASLYSDYT 450
    FAVWDDSTPG ERVLVPFAKA YSGLTDEEMR KVDAIIRKTT VEKFGPVRSV 500
    TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKQVE DADTLSTLQG 550
    LL 552
    Length:552
    Mass (Da):62,265
    Last modified:June 28, 2011 - v1
    Checksum:i004F4914D0D38264
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002620 Genomic DNA. Translation: AEB58547.1.
    RefSeqiYP_004380299.1. NC_015410.1.

    Genome annotation databases

    EnsemblBacteriaiAEB58547; AEB58547; MDS_2516.
    GeneIDi10457298.
    KEGGipmk:MDS_2516.
    PATRICi54485714. VBIPseMen187712_2560.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002620 Genomic DNA. Translation: AEB58547.1 .
    RefSeqi YP_004380299.1. NC_015410.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB58547 ; AEB58547 ; MDS_2516 .
    GeneIDi 10457298.
    KEGGi pmk:MDS_2516.
    PATRICi 54485714. VBIPseMen187712_2560.

    Phylogenomic databases

    KOi K01971.
    OMAi KHAKPAL.

    Enzyme and pathway databases

    BioCyci PMEN1001585:GIWS-2548-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
      Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
      J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NK-01Imported.

    Entry informationi

    Entry nameiF4DUS8_PSEMN
    AccessioniPrimary (citable) accession number: F4DUS8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3