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F4DUS8

- F4DUS8_PSEMN

UniProt

F4DUS8 - F4DUS8_PSEMN

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
MDS_2516
Organism
Pseudomonas mendocina (strain NK-01)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMEN1001585:GIWS-2548-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:MDS_2516Imported
OrganismiPseudomonas mendocina (strain NK-01)Imported
Taxonomic identifieri1001585 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000008306: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiKHAKPAL.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4DUS8-1 [UniParc]FASTAAdd to Basket

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MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ    50
IVPTRVLREL ATQLSGLSDW LFEESYQTVG DLAETIALLL PDSQHVSDQG 100
LAWWLEEQLL PLRGLPPAEL AERLPPLWAQ LDRESLMVSL KLLTGAFRVG 150
VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD LSHRPTTQRY LALIAAESED 200
EHAQRGGQPY PFFLAHPLQQ PLEQFDAVLG AASDWLVEWK WDGIRAQLVK 250
RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 300
AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ 350
DERRARLELL VAEVGDGRLQ LSPQLTGSDW QDFARQREAS RELGVEGMML 400
KRRDSLYGVG RTRDLGLWWK WKIDPFSVDA VLIYAQRGHG RRASLYSDYT 450
FAVWDDSTPG ERVLVPFAKA YSGLTDEEMR KVDAIIRKTT VEKFGPVRSV 500
TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKQVE DADTLSTLQG 550
LL 552
Length:552
Mass (Da):62,265
Last modified:June 28, 2011 - v1
Checksum:i004F4914D0D38264
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002620 Genomic DNA. Translation: AEB58547.1.
RefSeqiYP_004380299.1. NC_015410.1.

Genome annotation databases

EnsemblBacteriaiAEB58547; AEB58547; MDS_2516.
GeneIDi10457298.
KEGGipmk:MDS_2516.
PATRICi54485714. VBIPseMen187712_2560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002620 Genomic DNA. Translation: AEB58547.1 .
RefSeqi YP_004380299.1. NC_015410.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEB58547 ; AEB58547 ; MDS_2516 .
GeneIDi 10457298.
KEGGi pmk:MDS_2516.
PATRICi 54485714. VBIPseMen187712_2560.

Phylogenomic databases

KOi K01971.
OMAi KHAKPAL.

Enzyme and pathway databases

BioCyci PMEN1001585:GIWS-2548-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
    Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
    J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NK-01Imported.

Entry informationi

Entry nameiF4DUS8_PSEMN
AccessioniPrimary (citable) accession number: F4DUS8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: May 14, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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