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F4DUS8 (F4DUS8_PSEMN) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:MDS_2516 EMBL AEB58547.1
OrganismPseudomonas mendocina (strain NK-01) [Complete proteome] [HAMAP] EMBL AEB58547.1
Taxonomic identifier1001585 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length552 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F4DUS8 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 004F4914D0D38264

FASTA55262,265
        10         20         30         40         50         60 
MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ IVPTRVLREL 

        70         80         90        100        110        120 
ATQLSGLSDW LFEESYQTVG DLAETIALLL PDSQHVSDQG LAWWLEEQLL PLRGLPPAEL 

       130        140        150        160        170        180 
AERLPPLWAQ LDRESLMVSL KLLTGAFRVG VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD 

       190        200        210        220        230        240 
LSHRPTTQRY LALIAAESED EHAQRGGQPY PFFLAHPLQQ PLEQFDAVLG AASDWLVEWK 

       250        260        270        280        290        300 
WDGIRAQLVK RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 

       310        320        330        340        350        360 
AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ DERRARLELL 

       370        380        390        400        410        420 
VAEVGDGRLQ LSPQLTGSDW QDFARQREAS RELGVEGMML KRRDSLYGVG RTRDLGLWWK 

       430        440        450        460        470        480 
WKIDPFSVDA VLIYAQRGHG RRASLYSDYT FAVWDDSTPG ERVLVPFAKA YSGLTDEEMR 

       490        500        510        520        530        540 
KVDAIIRKTT VEKFGPVRSV TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKQVE 

       550 
DADTLSTLQG LL 

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References

[1]"Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NK-01 EMBL AEB58547.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002620 Genomic DNA. Translation: AEB58547.1.
RefSeqYP_004380299.1. NC_015410.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB58547; AEB58547; MDS_2516.
GeneID10457298.
KEGGpmk:MDS_2516.
PATRIC54485714. VBIPseMen187712_2560.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAKHAKPAL.

Enzyme and pathway databases

BioCycPMEN1001585:GIWS-2548-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4DUS8_PSEMN
AccessionPrimary (citable) accession number: F4DUS8
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: May 14, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)