F4DUS8 (F4DUS8_PSEMN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AEB58547.1

Gene names

Ordered Locus Names:

MDS_2516 EMBL AEB58547.1

Organism

Pseudomonas mendocina (strain NK-01) [Complete proteome] [HAMAP]

Taxonomic identifier

1001585 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas aeruginosa group › Pseudomonas mendocina

Protein attributes

Sequence length	552 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEB58547.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4DUS8 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 004F4914D0D38264	FASTA	552	62,265
	10 20 30 40 50 60 MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ IVPTRVLREL 70 80 90 100 110 120 ATQLSGLSDW LFEESYQTVG DLAETIALLL PDSQHVSDQG LAWWLEEQLL PLRGLPPAEL 130 140 150 160 170 180 AERLPPLWAQ LDRESLMVSL KLLTGAFRVG VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD 190 200 210 220 230 240 LSHRPTTQRY LALIAAESED EHAQRGGQPY PFFLAHPLQQ PLEQFDAVLG AASDWLVEWK 250 260 270 280 290 300 WDGIRAQLVK RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 310 320 330 340 350 360 AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ DERRARLELL 370 380 390 400 410 420 VAEVGDGRLQ LSPQLTGSDW QDFARQREAS RELGVEGMML KRRDSLYGVG RTRDLGLWWK 430 440 450 460 470 480 WKIDPFSVDA VLIYAQRGHG RRASLYSDYT FAVWDDSTPG ERVLVPFAKA YSGLTDEEMR 490 500 510 520 530 540 KVDAIIRKTT VEKFGPVRSV TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKQVE 550 DADTLSTLQG LL

References

[1]

"Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides." Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S. J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NK-01 EMBL AEB58547.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002620 Genomic DNA. Translation: AEB58547.1.
RefSeq	YP_004380299.1. NC_015410.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEB58547; AEB58547; MDS_2516.
GeneID	10457298.
KEGG	pmk:MDS_2516.
PATRIC	54485714. VBIPseMen187712_2560.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	PMEN1001585:GIWS-2548-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4DUS8_PSEMN

Accession

Primary (citable) accession number: F4DUS8

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)