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F4DU16

- F4DU16_PSEMN

UniProt

F4DU16 - F4DU16_PSEMN

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

MDS_2413

Organism
Pseudomonas mendocina (strain NK-01)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPMEN1001585:GIWS-2445-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:MDS_2413Imported
    OrganismiPseudomonas mendocina (strain NK-01)Imported
    Taxonomic identifieri1001585 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000008306: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF4DU16.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiSACDMAL.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4DU16-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARAQSEYNR KRNFEQTSEP REQPRKRRSK AGALRFVVQK HDARRLHYDF    50
    RLELDGTLKS WAVPKGPSLD PTQKRLAVHV EDHPLDYASF EGSIAEGNYG 100
    AGDVIVWDHG IWQPQGDPAG AYQAGKLKFT LVGEKLSGDW TLVRTRLRGS 150
    GDKEQWLLIK ERDDIARPSD EYDIVEAQPQ SVISGALVGG PSKEAKRKES 200
    TKPAKSRKAQ TEFPDSLAPQ LATLAERPPE GDWLYEVKFD GYRILARMRG 250
    DEVRLLTRNG HDWTERLPQQ ATALAKLGLS DSWLDGEVVA LNEQGLPDFQ 300
    QLQNAFDIGR SHDLIYYLFD APFLNGEDMR EVPLETRRGK LKTALGSTRR 350
    SPLRFSEAFT AHHRDIVESA CAMSLEGVIG KRSGSLYVSR RSADWIKLKC 400
    RLRQEFVIVG YTKPQGSRSG FGALLLAVNE AGGLRYAGRV GTGFGEASLK 450
    ALHEQLRKLG RDESPLERKL TAALARGVSW VEPQLVGEVE FAEWTREGIV 500
    RQASFIALRS DKPTAQIVRE HPRAPGAAAK KQTKKAESSC KSSAKPVVAG 550
    VPISNPQRVI DPESGTTKLQ LAQFYADIAE WLLPYLRKRP VSLVRAPDGV 600
    EGEQFFQKHA ERLAIPNIKH LDPKLDPGHA RLMEIDSVPA LVGAAQMGCI 650
    EFHRWGATSD RIETPDHFVL DLDPDPALPW RSMLEATRLT LSVLDELGLQ 700
    AFLKTSGGKG MHIIVPLARH AGWDTVKGFA KALAQFMARQ LPERFTATSG 750
    PKNRVGKIFI DYLRNGRGAS TVSAYSVRAR PGLPVSVPIA RDELDGLRSA 800
    QQWTVANLQR RLDGLRQDPW AGYANRQRLT RAMWDRLGAE AP 842
    Length:842
    Mass (Da):93,804
    Last modified:June 28, 2011 - v1
    Checksum:iC078C9F75CC53B10
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002620 Genomic DNA. Translation: AEB58444.1.
    RefSeqiWP_013715533.1. NC_015410.1.
    YP_004380196.1. NC_015410.1.

    Genome annotation databases

    EnsemblBacteriaiAEB58444; AEB58444; MDS_2413.
    GeneIDi10457195.
    KEGGipmk:MDS_2413.
    PATRICi54485500. VBIPseMen187712_2454.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002620 Genomic DNA. Translation: AEB58444.1 .
    RefSeqi WP_013715533.1. NC_015410.1.
    YP_004380196.1. NC_015410.1.

    3D structure databases

    ProteinModelPortali F4DU16.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB58444 ; AEB58444 ; MDS_2413 .
    GeneIDi 10457195.
    KEGGi pmk:MDS_2413.
    PATRICi 54485500. VBIPseMen187712_2454.

    Phylogenomic databases

    KOi K01971.
    OMAi SACDMAL.

    Enzyme and pathway databases

    BioCyci PMEN1001585:GIWS-2445-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
      Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
      J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NK-01Imported.

    Entry informationi

    Entry nameiF4DU16_PSEMN
    AccessioniPrimary (citable) accession number: F4DU16
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3