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F4DU16

- F4DU16_PSEMN

UniProt

F4DU16 - F4DU16_PSEMN

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
MDS_2413
Organism
Pseudomonas mendocina (strain NK-01)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMEN1001585:GIWS-2445-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:MDS_2413Imported
OrganismiPseudomonas mendocina (strain NK-01)Imported
Taxonomic identifieri1001585 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000008306: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4DU16.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiSACDMAL.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4DU16-1 [UniParc]FASTAAdd to Basket

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MARAQSEYNR KRNFEQTSEP REQPRKRRSK AGALRFVVQK HDARRLHYDF    50
RLELDGTLKS WAVPKGPSLD PTQKRLAVHV EDHPLDYASF EGSIAEGNYG 100
AGDVIVWDHG IWQPQGDPAG AYQAGKLKFT LVGEKLSGDW TLVRTRLRGS 150
GDKEQWLLIK ERDDIARPSD EYDIVEAQPQ SVISGALVGG PSKEAKRKES 200
TKPAKSRKAQ TEFPDSLAPQ LATLAERPPE GDWLYEVKFD GYRILARMRG 250
DEVRLLTRNG HDWTERLPQQ ATALAKLGLS DSWLDGEVVA LNEQGLPDFQ 300
QLQNAFDIGR SHDLIYYLFD APFLNGEDMR EVPLETRRGK LKTALGSTRR 350
SPLRFSEAFT AHHRDIVESA CAMSLEGVIG KRSGSLYVSR RSADWIKLKC 400
RLRQEFVIVG YTKPQGSRSG FGALLLAVNE AGGLRYAGRV GTGFGEASLK 450
ALHEQLRKLG RDESPLERKL TAALARGVSW VEPQLVGEVE FAEWTREGIV 500
RQASFIALRS DKPTAQIVRE HPRAPGAAAK KQTKKAESSC KSSAKPVVAG 550
VPISNPQRVI DPESGTTKLQ LAQFYADIAE WLLPYLRKRP VSLVRAPDGV 600
EGEQFFQKHA ERLAIPNIKH LDPKLDPGHA RLMEIDSVPA LVGAAQMGCI 650
EFHRWGATSD RIETPDHFVL DLDPDPALPW RSMLEATRLT LSVLDELGLQ 700
AFLKTSGGKG MHIIVPLARH AGWDTVKGFA KALAQFMARQ LPERFTATSG 750
PKNRVGKIFI DYLRNGRGAS TVSAYSVRAR PGLPVSVPIA RDELDGLRSA 800
QQWTVANLQR RLDGLRQDPW AGYANRQRLT RAMWDRLGAE AP 842
Length:842
Mass (Da):93,804
Last modified:June 28, 2011 - v1
Checksum:iC078C9F75CC53B10
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002620 Genomic DNA. Translation: AEB58444.1.
RefSeqiWP_013715533.1. NC_015410.1.
YP_004380196.1. NC_015410.1.

Genome annotation databases

EnsemblBacteriaiAEB58444; AEB58444; MDS_2413.
GeneIDi10457195.
KEGGipmk:MDS_2413.
PATRICi54485500. VBIPseMen187712_2454.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002620 Genomic DNA. Translation: AEB58444.1 .
RefSeqi WP_013715533.1. NC_015410.1.
YP_004380196.1. NC_015410.1.

3D structure databases

ProteinModelPortali F4DU16.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEB58444 ; AEB58444 ; MDS_2413 .
GeneIDi 10457195.
KEGGi pmk:MDS_2413.
PATRICi 54485500. VBIPseMen187712_2454.

Phylogenomic databases

KOi K01971.
OMAi SACDMAL.

Enzyme and pathway databases

BioCyci PMEN1001585:GIWS-2445-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
    Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
    J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NK-01Imported.

Entry informationi

Entry nameiF4DU16_PSEMN
AccessioniPrimary (citable) accession number: F4DU16
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 3, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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