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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

MDS_2413

Organism
Pseudomonas mendocina (strain NK-01)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMEN1001585:GIWS-2445-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:MDS_2413Imported
OrganismiPseudomonas mendocina (strain NK-01)Imported
Taxonomic identifieri1001585 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000008306 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4DU16.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4DU16-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARAQSEYNR KRNFEQTSEP REQPRKRRSK AGALRFVVQK HDARRLHYDF
60 70 80 90 100
RLELDGTLKS WAVPKGPSLD PTQKRLAVHV EDHPLDYASF EGSIAEGNYG
110 120 130 140 150
AGDVIVWDHG IWQPQGDPAG AYQAGKLKFT LVGEKLSGDW TLVRTRLRGS
160 170 180 190 200
GDKEQWLLIK ERDDIARPSD EYDIVEAQPQ SVISGALVGG PSKEAKRKES
210 220 230 240 250
TKPAKSRKAQ TEFPDSLAPQ LATLAERPPE GDWLYEVKFD GYRILARMRG
260 270 280 290 300
DEVRLLTRNG HDWTERLPQQ ATALAKLGLS DSWLDGEVVA LNEQGLPDFQ
310 320 330 340 350
QLQNAFDIGR SHDLIYYLFD APFLNGEDMR EVPLETRRGK LKTALGSTRR
360 370 380 390 400
SPLRFSEAFT AHHRDIVESA CAMSLEGVIG KRSGSLYVSR RSADWIKLKC
410 420 430 440 450
RLRQEFVIVG YTKPQGSRSG FGALLLAVNE AGGLRYAGRV GTGFGEASLK
460 470 480 490 500
ALHEQLRKLG RDESPLERKL TAALARGVSW VEPQLVGEVE FAEWTREGIV
510 520 530 540 550
RQASFIALRS DKPTAQIVRE HPRAPGAAAK KQTKKAESSC KSSAKPVVAG
560 570 580 590 600
VPISNPQRVI DPESGTTKLQ LAQFYADIAE WLLPYLRKRP VSLVRAPDGV
610 620 630 640 650
EGEQFFQKHA ERLAIPNIKH LDPKLDPGHA RLMEIDSVPA LVGAAQMGCI
660 670 680 690 700
EFHRWGATSD RIETPDHFVL DLDPDPALPW RSMLEATRLT LSVLDELGLQ
710 720 730 740 750
AFLKTSGGKG MHIIVPLARH AGWDTVKGFA KALAQFMARQ LPERFTATSG
760 770 780 790 800
PKNRVGKIFI DYLRNGRGAS TVSAYSVRAR PGLPVSVPIA RDELDGLRSA
810 820 830 840
QQWTVANLQR RLDGLRQDPW AGYANRQRLT RAMWDRLGAE AP
Length:842
Mass (Da):93,804
Last modified:June 28, 2011 - v1
Checksum:iC078C9F75CC53B10
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002620 Genomic DNA. Translation: AEB58444.1.
RefSeqiYP_004380196.1. NC_015410.1.

Genome annotation databases

EnsemblBacteriaiAEB58444; AEB58444; MDS_2413.
KEGGipmk:MDS_2413.
PATRICi54485500. VBIPseMen187712_2454.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002620 Genomic DNA. Translation: AEB58444.1.
RefSeqiYP_004380196.1. NC_015410.1.

3D structure databases

ProteinModelPortaliF4DU16.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB58444; AEB58444; MDS_2413.
KEGGipmk:MDS_2413.
PATRICi54485500. VBIPseMen187712_2454.

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciPMEN1001585:GIWS-2445-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
    Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
    J. Bacteriol. 193:3413-3414(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NK-01Imported.

Entry informationi

Entry nameiF4DU16_PSEMN
AccessioniPrimary (citable) accession number: F4DU16
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 1, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.