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F4DU16 (F4DU16_PSEMN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:MDS_2413 EMBL AEB58444.1
OrganismPseudomonas mendocina (strain NK-01) [Complete proteome] [HAMAP] EMBL AEB58444.1
Taxonomic identifier1001585 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length842 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F4DU16 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: C078C9F75CC53B10

FASTA84293,804
        10         20         30         40         50         60 
MARAQSEYNR KRNFEQTSEP REQPRKRRSK AGALRFVVQK HDARRLHYDF RLELDGTLKS 

        70         80         90        100        110        120 
WAVPKGPSLD PTQKRLAVHV EDHPLDYASF EGSIAEGNYG AGDVIVWDHG IWQPQGDPAG 

       130        140        150        160        170        180 
AYQAGKLKFT LVGEKLSGDW TLVRTRLRGS GDKEQWLLIK ERDDIARPSD EYDIVEAQPQ 

       190        200        210        220        230        240 
SVISGALVGG PSKEAKRKES TKPAKSRKAQ TEFPDSLAPQ LATLAERPPE GDWLYEVKFD 

       250        260        270        280        290        300 
GYRILARMRG DEVRLLTRNG HDWTERLPQQ ATALAKLGLS DSWLDGEVVA LNEQGLPDFQ 

       310        320        330        340        350        360 
QLQNAFDIGR SHDLIYYLFD APFLNGEDMR EVPLETRRGK LKTALGSTRR SPLRFSEAFT 

       370        380        390        400        410        420 
AHHRDIVESA CAMSLEGVIG KRSGSLYVSR RSADWIKLKC RLRQEFVIVG YTKPQGSRSG 

       430        440        450        460        470        480 
FGALLLAVNE AGGLRYAGRV GTGFGEASLK ALHEQLRKLG RDESPLERKL TAALARGVSW 

       490        500        510        520        530        540 
VEPQLVGEVE FAEWTREGIV RQASFIALRS DKPTAQIVRE HPRAPGAAAK KQTKKAESSC 

       550        560        570        580        590        600 
KSSAKPVVAG VPISNPQRVI DPESGTTKLQ LAQFYADIAE WLLPYLRKRP VSLVRAPDGV 

       610        620        630        640        650        660 
EGEQFFQKHA ERLAIPNIKH LDPKLDPGHA RLMEIDSVPA LVGAAQMGCI EFHRWGATSD 

       670        680        690        700        710        720 
RIETPDHFVL DLDPDPALPW RSMLEATRLT LSVLDELGLQ AFLKTSGGKG MHIIVPLARH 

       730        740        750        760        770        780 
AGWDTVKGFA KALAQFMARQ LPERFTATSG PKNRVGKIFI DYLRNGRGAS TVSAYSVRAR 

       790        800        810        820        830        840 
PGLPVSVPIA RDELDGLRSA QQWTVANLQR RLDGLRQDPW AGYANRQRLT RAMWDRLGAE 


AP 

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References

[1]"Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NK-01 EMBL AEB58444.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002620 Genomic DNA. Translation: AEB58444.1.
RefSeqYP_004380196.1. NC_015410.1.

3D structure databases

ProteinModelPortalF4DU16.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB58444; AEB58444; MDS_2413.
GeneID10457195.
KEGGpmk:MDS_2413.
PATRIC54485500. VBIPseMen187712_2454.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAHPLDYAD.

Enzyme and pathway databases

BioCycPMEN1001585:GIWS-2445-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4DU16_PSEMN
AccessionPrimary (citable) accession number: F4DU16
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)