F4DP82 (F4DP82_PSEMN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL AEB56757.1

Gene names

Ordered Locus Names:

MDS_0726 EMBL AEB56757.1

Organism

Pseudomonas mendocina (strain NK-01) [Complete proteome] [HAMAP]

Taxonomic identifier

1001585 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas aeruginosa group › Pseudomonas mendocina

Protein attributes

Sequence length	358 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4DP82 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: B1F6F021BBE916C6	FASTA	358	38,465
	10 20 30 40 50 60 MRPLAAIVDL SAIAHNYAVA KRCAPGRQAF AVVKANAYGH GVREVVTALH DLADGFAVAC 70 80 90 100 110 120 LEEAAEVRAM HGEARVLLLE GCFEASEYAI AAQLGLDLVI QGAAQAEALL ASDLVRPLNV 130 140 150 160 170 180 WLKLDSGMHR LGFDAANLRH WYARLENAEQ VNELNLLSHF ACADERGHPL TEQQVERFLD 190 200 210 220 230 240 LLDLDFSHRS LANSAAVLTI PAAHMDWLRP GIMLYGATPF AELSARELGL KPAMTLAARV 250 260 270 280 290 300 IAVREVAIGE SVGYGASWVA QRPSRIATVS CGYADGYPRH APSGTPVLVE GQRAALAGRV 310 320 330 340 350 SMDMLTVDIT DLPEADVDSP VELWGANLPL DEVAAACSTI GYELLSKVTA RVPRRYIG

References

[1]

"Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides." Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S. J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NK-01 EMBL AEB56757.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002620 Genomic DNA. Translation: AEB56757.1.
RefSeq	YP_004378508.1. NC_015410.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEB56757; AEB56757; MDS_0726.
GeneID	10455507.
KEGG	pmk:MDS_0726.
PATRIC	54481976. VBIPseMen187712_0735.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
BioCyc	PMEN1001585:GIWS-728-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4DP82_PSEMN

Accession

Primary (citable) accession number: F4DP82

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)