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F4DP82 (F4DP82_PSEMN) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length358 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site341Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2541Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1301Substrate By similarity HAMAP-Rule MF_01201
Binding site3021Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue341N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
F4DP82 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: B1F6F021BBE916C6

FASTA35838,465
        10         20         30         40         50         60 
MRPLAAIVDL SAIAHNYAVA KRCAPGRQAF AVVKANAYGH GVREVVTALH DLADGFAVAC 

        70         80         90        100        110        120 
LEEAAEVRAM HGEARVLLLE GCFEASEYAI AAQLGLDLVI QGAAQAEALL ASDLVRPLNV 

       130        140        150        160        170        180 
WLKLDSGMHR LGFDAANLRH WYARLENAEQ VNELNLLSHF ACADERGHPL TEQQVERFLD 

       190        200        210        220        230        240 
LLDLDFSHRS LANSAAVLTI PAAHMDWLRP GIMLYGATPF AELSARELGL KPAMTLAARV 

       250        260        270        280        290        300 
IAVREVAIGE SVGYGASWVA QRPSRIATVS CGYADGYPRH APSGTPVLVE GQRAALAGRV 

       310        320        330        340        350 
SMDMLTVDIT DLPEADVDSP VELWGANLPL DEVAAACSTI GYELLSKVTA RVPRRYIG 

« Hide

References

[1]"Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides."
Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X., Song D., Yang X., Wang S.
J. Bacteriol. 193:3413-3414(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NK-01 EMBL AEB56757.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002620 Genomic DNA. Translation: AEB56757.1.
RefSeqYP_004378508.1. NC_015410.1.

3D structure databases

ProteinModelPortalF4DP82.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB56757; AEB56757; MDS_0726.
GeneID10455507.
KEGGpmk:MDS_0726.
PATRIC54481976. VBIPseMen187712_0735.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.
OMAFLGEDYH.

Enzyme and pathway databases

BioCycPMEN1001585:GIWS-728-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4DP82_PSEMN
AccessionPrimary (citable) accession number: F4DP82
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: February 19, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)