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F4DJC9 (F4DJC9_CHLPE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide chain release factor 1 HAMAP-Rule MF_00093
Short name=RF-1 HAMAP-Rule MF_00093
Gene names
Name:prfA HAMAP-Rule MF_00093 EMBL AEB41952.1
Ordered Locus Names:G5S_1035
OrganismChlamydophila pecorum (strain ATCC VR-628 / E58) [Complete proteome] [HAMAP]
Taxonomic identifier331635 [NCBI]
Taxonomic lineageBacteria › Chlamydiae › Chlamydiales › Chlamydiaceae › Chlamydia/Chlamydophila group › Chlamydia ›

Protein attributes

Sequence length363 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA By similarity. HAMAP-Rule MF_00093

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00093.

Post-translational modification

Methylated by PrmC. Methylation increases the termination efficiency of RF1 By similarity. HAMAP-Rule MF_00093

Sequence similarities

Belongs to the prokaryotic/mitochondrial release factor family. HAMAP-Rule MF_00093

Ontologies

Keywords
   Biological processProtein biosynthesis HAMAP-Rule MF_00093
   Cellular componentCytoplasm HAMAP-Rule MF_00093
   PTMMethylation HAMAP-Rule MF_00093
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functiontranslation release factor activity, codon specific

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Modified residue2361N5-methylglutamine By similarity HAMAP-Rule MF_00093

Sequences

Sequence LengthMass (Da)Tools
F4DJC9 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: D16F298667AC5EB1

FASTA36340,812
        10         20         30         40         50         60 
MFDDTKLTEY LSRLEEIEVR LSSPEIFDHP EEYKALSKEH ARLSELKEAY AQLQEQEKIL 

        70         80         90        100        110        120 
ADDKQALSME KDPEMIAMLE EGLVEGKAET ERLRKVLENL LVPPDPDDDL NVIMELRAGT 

       130        140        150        160        170        180 
GGEEAALFVG DCVRMYHLYS AAKGWKYEVL SSSESDLKGY KEYVMGISGT GVKRFLQYEA 

       190        200        210        220        230        240 
GTHRVQRVPE TETQGRVHTS AITVAILPEP AEDDEIIIDE KDLRIDTFRA SGAGGQHVNV 

       250        260        270        280        290        300 
TDSAVRITHL PTGVVVTCQD ERSQHKNKDK AMRILKARIR DAEMQKRQKE ASAMRSAQVG 

       310        320        330        340        350        360 
SGDRSERIRT YNFSQNRVTD HRIGLTLYSL DKVMEGDLDP ITTALVSHAY HQLLSENGNS 


SAS

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References

[1]"Genome sequence of the obligate intracellular animal pathogen Chlamydia pecorum E58."
Mojica S., Huot Creasy H., Daugherty S., Read T.D., Kim T., Kaltenboeck B., Bavoil P., Myers G.S.
J. Bacteriol. 193:3690-3690(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-628 / E58.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002608 Genomic DNA. Translation: AEB41952.1.
RefSeqYP_004377655.1. NC_015408.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB41952; AEB41952; G5S_1035.
GeneID10448626.
KEGGcpm:G5S_1035.
PATRIC54467975. VBIChlPec99706_0923.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02835.

Enzyme and pathway databases

BioCycCPEC331635:GHCA-953-MONOMER.

Family and domain databases

Gene3D3.30.160.20. 1 hit.
HAMAPMF_00093. Rel_fac_1.
InterProIPR014720. dsRNA-bd-like_dom.
IPR005139. PCRF.
IPR000352. Pep_chain_release_fac_I_II.
IPR004373. PrfA.
[Graphical view]
PfamPF03462. PCRF. 1 hit.
PF00472. RF-1. 1 hit.
[Graphical view]
SMARTSM00937. PCRF. 1 hit.
[Graphical view]
TIGRFAMsTIGR00019. prfA. 1 hit.
PROSITEPS00745. RF_PROK_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4DJC9_CHLPE
AccessionPrimary (citable) accession number: F4DJC9
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info