F4D177 (F4D177_PSEUX) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEA26865.1

Gene names

Ordered Locus Names:

Psed_4718 EMBL AEA26865.1

Organism

Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) [Complete proteome] [HAMAP]

Taxonomic identifier

675635 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Pseudonocardia › Pseudonocardia dioxanivorans

Protein attributes

Sequence length	356 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEA26865.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4D177 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: CE0D9A5FE410899A	FASTA	356	40,374
	10 20 30 40 50 60 MDLPVMPPVK PMLAKPVAAI PDGRHYEPKW DGFRSIIFRD GDEVEIGSRN ERPMTRYFPE 70 80 90 100 110 120 VVEAVKANFP ERAVIDGEIV VVDRERNRLD FEALQQRIHP ADSRVRLLAE QTPASFVAFD 130 140 150 160 170 180 LLALGDDDLT GSRLDERRAT LERVLGDAKP PVHITPATQD PVLAEQWFRE FEGAGLDGLI 190 200 210 220 230 240 AKPLDLTYQP DKRVMAKIKH ERTCDCVVAG YRVHKSGPDA IGSLLLGLFD ERGVLASVGV 250 260 270 280 290 300 VGAFPMARRR ALFTELQPLV TEFEGHPWNW AAHELGERTP RKNEGSRWNA GKDLSFVPLR 310 320 330 340 350 PERVVEVRYD YMEGLRFRHT AQFVRWRDDR TPESCTYEQL EQPVSFDLGD VLGLPD

References

[1]

"Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190." Sales C.M., Mahendra S., Grostern A., Parales R.E., Goodwin L.A., Woyke T., Nolan M., Lapidus A., Chertkov O., Ovchinnikova G., Sczyrba A., Alvarez-Cohen L. J. Bacteriol. 193:4549-4550(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002593 Genomic DNA. Translation: AEA26865.1.
RefSeq	YP_004334718.1. NC_015312.1.
3D structure databases
ProteinModelPortal	F4D177.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEA26865; AEA26865; Psed_4718.
GeneID	10366562.
KEGG	pdx:Psed_4718.
PATRIC	54401043. VBIPseDio141225_4790.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	PDIO675635:GHMF-5076-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4D177_PSEUX

Accession

Primary (citable) accession number: F4D177

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)