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F4D177 (F4D177_PSEUX) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length356 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEA26865.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F4D177 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: CE0D9A5FE410899A

FASTA35640,374
        10         20         30         40         50         60 
MDLPVMPPVK PMLAKPVAAI PDGRHYEPKW DGFRSIIFRD GDEVEIGSRN ERPMTRYFPE 

        70         80         90        100        110        120 
VVEAVKANFP ERAVIDGEIV VVDRERNRLD FEALQQRIHP ADSRVRLLAE QTPASFVAFD 

       130        140        150        160        170        180 
LLALGDDDLT GSRLDERRAT LERVLGDAKP PVHITPATQD PVLAEQWFRE FEGAGLDGLI 

       190        200        210        220        230        240 
AKPLDLTYQP DKRVMAKIKH ERTCDCVVAG YRVHKSGPDA IGSLLLGLFD ERGVLASVGV 

       250        260        270        280        290        300 
VGAFPMARRR ALFTELQPLV TEFEGHPWNW AAHELGERTP RKNEGSRWNA GKDLSFVPLR 

       310        320        330        340        350 
PERVVEVRYD YMEGLRFRHT AQFVRWRDDR TPESCTYEQL EQPVSFDLGD VLGLPD 

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References

[1]"Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190."
Sales C.M., Mahendra S., Grostern A., Parales R.E., Goodwin L.A., Woyke T., Nolan M., Lapidus A., Chertkov O., Ovchinnikova G., Sczyrba A., Alvarez-Cohen L.
J. Bacteriol. 193:4549-4550(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002593 Genomic DNA. Translation: AEA26865.1.
RefSeqYP_004334718.1. NC_015312.1.

3D structure databases

ProteinModelPortalF4D177.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA26865; AEA26865; Psed_4718.
GeneID10366562.
KEGGpdx:Psed_4718.
PATRIC54401043. VBIPseDio141225_4790.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAERTADCV.

Enzyme and pathway databases

BioCycPDIO675635:GHMF-4761-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4D177_PSEUX
AccessionPrimary (citable) accession number: F4D177
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)