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F4D177

- F4D177_PSEUX

UniProt

F4D177 - F4D177_PSEUX

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Psed_4718

Organism
Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPDIO675635:GHMF-4761-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Psed_4718Imported
    OrganismiPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)Imported
    Taxonomic identifieri675635 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaePseudonocardia
    ProteomesiUP000007809: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF4D177.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiHERTADC.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4D177-1 [UniParc]FASTAAdd to Basket

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    MDLPVMPPVK PMLAKPVAAI PDGRHYEPKW DGFRSIIFRD GDEVEIGSRN    50
    ERPMTRYFPE VVEAVKANFP ERAVIDGEIV VVDRERNRLD FEALQQRIHP 100
    ADSRVRLLAE QTPASFVAFD LLALGDDDLT GSRLDERRAT LERVLGDAKP 150
    PVHITPATQD PVLAEQWFRE FEGAGLDGLI AKPLDLTYQP DKRVMAKIKH 200
    ERTCDCVVAG YRVHKSGPDA IGSLLLGLFD ERGVLASVGV VGAFPMARRR 250
    ALFTELQPLV TEFEGHPWNW AAHELGERTP RKNEGSRWNA GKDLSFVPLR 300
    PERVVEVRYD YMEGLRFRHT AQFVRWRDDR TPESCTYEQL EQPVSFDLGD 350
    VLGLPD 356
    Length:356
    Mass (Da):40,374
    Last modified:June 28, 2011 - v1
    Checksum:iCE0D9A5FE410899A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002593 Genomic DNA. Translation: AEA26865.1.
    RefSeqiYP_004334718.1. NC_015312.1.

    Genome annotation databases

    EnsemblBacteriaiAEA26865; AEA26865; Psed_4718.
    GeneIDi10366562.
    KEGGipdx:Psed_4718.
    PATRICi54401043. VBIPseDio141225_4790.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002593 Genomic DNA. Translation: AEA26865.1 .
    RefSeqi YP_004334718.1. NC_015312.1.

    3D structure databases

    ProteinModelPortali F4D177.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEA26865 ; AEA26865 ; Psed_4718 .
    GeneIDi 10366562.
    KEGGi pdx:Psed_4718.
    PATRICi 54401043. VBIPseDio141225_4790.

    Phylogenomic databases

    KOi K01971.
    OMAi HERTADC.

    Enzyme and pathway databases

    BioCyci PDIO675635:GHMF-4761-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190Imported.

    Entry informationi

    Entry nameiF4D177_PSEUX
    AccessioniPrimary (citable) accession number: F4D177
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3