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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Psed_4718

Organism
Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-4761-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Psed_4718Imported
OrganismiPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)Imported
Taxonomic identifieri675635 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaePseudonocardia
ProteomesiUP000007809 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4D177.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4D177-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLPVMPPVK PMLAKPVAAI PDGRHYEPKW DGFRSIIFRD GDEVEIGSRN
60 70 80 90 100
ERPMTRYFPE VVEAVKANFP ERAVIDGEIV VVDRERNRLD FEALQQRIHP
110 120 130 140 150
ADSRVRLLAE QTPASFVAFD LLALGDDDLT GSRLDERRAT LERVLGDAKP
160 170 180 190 200
PVHITPATQD PVLAEQWFRE FEGAGLDGLI AKPLDLTYQP DKRVMAKIKH
210 220 230 240 250
ERTCDCVVAG YRVHKSGPDA IGSLLLGLFD ERGVLASVGV VGAFPMARRR
260 270 280 290 300
ALFTELQPLV TEFEGHPWNW AAHELGERTP RKNEGSRWNA GKDLSFVPLR
310 320 330 340 350
PERVVEVRYD YMEGLRFRHT AQFVRWRDDR TPESCTYEQL EQPVSFDLGD

VLGLPD
Length:356
Mass (Da):40,374
Last modified:June 27, 2011 - v1
Checksum:iCE0D9A5FE410899A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA26865.1.
RefSeqiWP_013676777.1. NC_015312.1.
YP_004334718.1. NC_015312.1.

Genome annotation databases

EnsemblBacteriaiAEA26865; AEA26865; Psed_4718.
KEGGipdx:Psed_4718.
PATRICi54401043. VBIPseDio141225_4790.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA26865.1.
RefSeqiWP_013676777.1. NC_015312.1.
YP_004334718.1. NC_015312.1.

3D structure databases

ProteinModelPortaliF4D177.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA26865; AEA26865; Psed_4718.
KEGGipdx:Psed_4718.
PATRICi54401043. VBIPseDio141225_4790.

Phylogenomic databases

OMAiHERTADC.

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-4761-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190Imported.

Entry informationi

Entry nameiF4D177_PSEUX
AccessioniPrimary (citable) accession number: F4D177
Entry historyi
Integrated into UniProtKB/TrEMBL: June 27, 2011
Last sequence update: June 27, 2011
Last modified: March 31, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.