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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Psed_3272

Organism
Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-3308-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Psed_3272Imported
OrganismiPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)Imported
Taxonomic identifieri675635 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaePseudonocardia
ProteomesiUP000007809 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiMAIEVED.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

F4CVX7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFAFGSPSHK ALSLTLVPLE EYRRKRDRSR TPEPVPDTDP AADGSDHDGG
60 70 80 90 100
RFVVQEHHAS ALHWDVRLER DGVLVSWAVP KGLPVDTETV RLAVRTEDHP
110 120 130 140 150
MEYLDFSGEI PAGEYGAGTM TIWDAGTYRT EKWSAREVAV VLQGQRARGR
160 170 180 190 200
FVFVRSDRER RDGWILRRSD PGTARDPLPR DTLPMLATPG PLPLGDGWWL
210 220 230 240 250
QVGFGGERVV VRVDGGRARF TDADGAELEV PALRAFGPTV GATPLLLDAE
260 270 280 290 300
LVGNPRRDAV LWIGDLLHLD GRDTLDVPFA DRLALLEGLE LVGPAWRPAP
310 320 330 340 350
AYRDAGQAVV DAAAEQGLPF VVAKRGDSPY RPGRRSDDWI EVATTAPAPA
360 370 380 390 400
ARRDRPATAA RPGRRDGVGR ARLTNPDKVL YPLTGTTKAQ VLGHYLAVAE
410 420 430 440 450
VMLPHLRDRP VTMVRWPDGV EKPSFFEKDV SRHAPGWIRT ARVGTPGGRS
460 470 480 490 500
ESADFPLLDD AEGLAWAANL AALELHVPQW RVGPRGGRGL PDLVVFDLDP
510 520 530 540 550
GEGANVVDCC RVAERIADLL AADGLSAHPR TSGSKGLQLY VPVTVSRAER
560 570 580 590 600
TAEYARDIAA TVAGESPRTV TDVMAKARRR GKVFVDWSQN NPAKTTIASY
610 620 630 640 650
SLRGRPRPTV ATPVTWDEVR ACRTVDDLVF TLDDLPGRIA EHGDLMAPLL
660
FTERPRLPRR G
Length:661
Mass (Da):72,328
Last modified:June 28, 2011 - v1
Checksum:iBAB6CF917C62CF46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA25462.1.
RefSeqiWP_013675383.1. NC_015312.1.
YP_004333315.1. NC_015312.1.

Genome annotation databases

EnsemblBacteriaiAEA25462; AEA25462; Psed_3272.
KEGGipdx:Psed_3272.
PATRICi54398083. VBIPseDio141225_3321.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA25462.1.
RefSeqiWP_013675383.1. NC_015312.1.
YP_004333315.1. NC_015312.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA25462; AEA25462; Psed_3272.
KEGGipdx:Psed_3272.
PATRICi54398083. VBIPseDio141225_3321.

Phylogenomic databases

KOiK01971.
OMAiMAIEVED.

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-3308-MONOMER.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190Imported.

Entry informationi

Entry nameiF4CVX7_PSEUX
AccessioniPrimary (citable) accession number: F4CVX7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 1, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.