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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Psed_2901

Organism
Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-2936-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Psed_2901Imported
OrganismiPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)Imported
Taxonomic identifieri675635 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaePseudonocardia
ProteomesiUP000007809 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

OMAiFHPWPVR.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

F4CPI4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAKTVVQLT VPGPEGDREV RLSSPDKVYF PARGITKRQV VEYYLAVSEP
60 70 80 90 100
MTRVLLNRPT NLKRFPDGVD GEPFFAKRLP KGAPPWVRTA TVTFPSGRKA
110 120 130 140 150
DTLAPSEPAV IAWAANLGTL DFHPWPVRAA DTDRPDELRI DLDPQPGTDF
160 170 180 190 200
ADAVAVAAVL REVLDEAGLV GWPKTSGGRG IHVFARIRPE WSFIEVRRAV
210 220 230 240 250
IAIARRVCAR IPEQATVDWW KEERGERVFL DYNQAARDRT IASAWSVRGL
260 270 280 290 300
PRATVSMPLT WEALPSVEPE DFDLLTVPGL LARDGDPHAG MDDAVGGIET
310 320 330 340
ALEWFAADER DRGLGELPYP PEYPKMPGEP MRVQPSRARA GKDAAG
Length:346
Mass (Da):38,128
Last modified:June 28, 2011 - v1
Checksum:i27A28819F576E381
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA25101.1.
RefSeqiWP_013675025.1. NC_015312.1.
YP_004332954.1. NC_015312.1.

Genome annotation databases

EnsemblBacteriaiAEA25101; AEA25101; Psed_2901.
KEGGipdx:Psed_2901.
PATRICi54397312. VBIPseDio141225_2936.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA25101.1.
RefSeqiWP_013675025.1. NC_015312.1.
YP_004332954.1. NC_015312.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA25101; AEA25101; Psed_2901.
KEGGipdx:Psed_2901.
PATRICi54397312. VBIPseDio141225_2936.

Phylogenomic databases

OMAiFHPWPVR.

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-2936-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190Imported.

Entry informationi

Entry nameiF4CPI4_PSEUX
AccessioniPrimary (citable) accession number: F4CPI4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 29, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.