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Protein
Submitted name:

DNA ligase D

Gene

Psed_4989

Organism
Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-5036-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Psed_4989Imported
OrganismiPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)Imported
Taxonomic identifieri675635 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaePseudonocardia
ProteomesiUP000007809 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHEVRIDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4CNA3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPARRPDAAL RPMLATPGRP PSGPGWAVEF KWDGVRALLD VDDAGEVHLT
60 70 80 90 100
SRNGNDVTLG YPDLLAGVDT GQPLVLDGEI VALDEAGRPD FGLLQNRMHV
110 120 130 140 150
RHPSGPLLAE VPVRFYAFDV LRVGQRSLLR ETYDDRRAAL AGLGVDGWAR
160 170 180 190 200
FAVPPSTTEV PPAQMLDVAR EHGLEGIVAK RRTSRYEPGR RAASWVKTAL
210 220 230 240 250
FTTREVVLGG WTPGQGRRGA LGSLLLGAYD DEGRLHYLGN VGSGFSEAAL
260 270 280 290 300
RSLREKLEQL RSDEDPFASG VPREHARGVR WVQPRLVGEV EYRTLTHDAR
310 320 330 340 350
LRHSVWRGLR PDRDPHEVRI DGAFARAPLA SYGVRAPAPE PARAPAASEP
360 370 380 390 400
AEAASARAEA PAERVRAATG DELAALDALR RKGTWHVAGE EVALTNLDKV
410 420 430 440 450
LFPGRDGGPP VTKRDFVRYH ARVAPYLLPY LQGRPVNMQR FPDGVAREGF
460 470 480 490 500
WQKEIPVHAP DWVTRWRYPD AEPGDVQDYV VVDSTATLVW LANLAAVELH
510 520 530 540 550
PWTSRLPDVH RPTWALIDID PGPRTAFDEV LAVARLYRAA LDHLGVAAAP
560 570 580 590 600
KVTGKRGVQI WVPVTPGPTF ADTRGWVEKV SRAVGRMVPE LISWEWHTDR
610 620 630 640 650
RAGRMRLDYT QNVINKTLVA PFSARPAAGA PVSMTLSWDE LDDPELRPDR
660 670 680
WTVGTALDRL DAVGDPMFPL VGREQVLPEL GGV
Length:683
Mass (Da):75,190
Last modified:June 28, 2011 - v1
Checksum:iF7F7D349CACEF0AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA27127.1.
RefSeqiWP_013677033.1. NC_015312.1.
YP_004334980.1. NC_015312.1.

Genome annotation databases

EnsemblBacteriaiAEA27127; AEA27127; Psed_4989.
KEGGipdx:Psed_4989.
PATRICi54401591. VBIPseDio141225_5059.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002593 Genomic DNA. Translation: AEA27127.1.
RefSeqiWP_013677033.1. NC_015312.1.
YP_004334980.1. NC_015312.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA27127; AEA27127; Psed_4989.
KEGGipdx:Psed_4989.
PATRICi54401591. VBIPseDio141225_5059.

Phylogenomic databases

KOiK01971.
OMAiHEVRIDG.

Enzyme and pathway databases

BioCyciPDIO675635:GHMF-5036-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190Imported.

Entry informationi

Entry nameiF4CNA3_PSEUX
AccessioniPrimary (citable) accession number: F4CNA3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 1, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.