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F4CNA3

- F4CNA3_PSEUX

UniProt

F4CNA3 - F4CNA3_PSEUX

Protein
Submitted name:

DNA ligase D

Gene

Psed_4989

Organism
Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPDIO675635:GHMF-5036-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Psed_4989Imported
    OrganismiPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)Imported
    Taxonomic identifieri675635 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaePseudonocardia
    ProteomesiUP000007809: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiAMERRTH.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4CNA3-1 [UniParc]FASTAAdd to Basket

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    MPARRPDAAL RPMLATPGRP PSGPGWAVEF KWDGVRALLD VDDAGEVHLT    50
    SRNGNDVTLG YPDLLAGVDT GQPLVLDGEI VALDEAGRPD FGLLQNRMHV 100
    RHPSGPLLAE VPVRFYAFDV LRVGQRSLLR ETYDDRRAAL AGLGVDGWAR 150
    FAVPPSTTEV PPAQMLDVAR EHGLEGIVAK RRTSRYEPGR RAASWVKTAL 200
    FTTREVVLGG WTPGQGRRGA LGSLLLGAYD DEGRLHYLGN VGSGFSEAAL 250
    RSLREKLEQL RSDEDPFASG VPREHARGVR WVQPRLVGEV EYRTLTHDAR 300
    LRHSVWRGLR PDRDPHEVRI DGAFARAPLA SYGVRAPAPE PARAPAASEP 350
    AEAASARAEA PAERVRAATG DELAALDALR RKGTWHVAGE EVALTNLDKV 400
    LFPGRDGGPP VTKRDFVRYH ARVAPYLLPY LQGRPVNMQR FPDGVAREGF 450
    WQKEIPVHAP DWVTRWRYPD AEPGDVQDYV VVDSTATLVW LANLAAVELH 500
    PWTSRLPDVH RPTWALIDID PGPRTAFDEV LAVARLYRAA LDHLGVAAAP 550
    KVTGKRGVQI WVPVTPGPTF ADTRGWVEKV SRAVGRMVPE LISWEWHTDR 600
    RAGRMRLDYT QNVINKTLVA PFSARPAAGA PVSMTLSWDE LDDPELRPDR 650
    WTVGTALDRL DAVGDPMFPL VGREQVLPEL GGV 683
    Length:683
    Mass (Da):75,190
    Last modified:June 28, 2011 - v1
    Checksum:iF7F7D349CACEF0AF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002593 Genomic DNA. Translation: AEA27127.1.
    RefSeqiWP_013677033.1. NC_015312.1.
    YP_004334980.1. NC_015312.1.

    Genome annotation databases

    EnsemblBacteriaiAEA27127; AEA27127; Psed_4989.
    GeneIDi10366837.
    KEGGipdx:Psed_4989.
    PATRICi54401591. VBIPseDio141225_5059.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002593 Genomic DNA. Translation: AEA27127.1 .
    RefSeqi WP_013677033.1. NC_015312.1.
    YP_004334980.1. NC_015312.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEA27127 ; AEA27127 ; Psed_4989 .
    GeneIDi 10366837.
    KEGGi pdx:Psed_4989.
    PATRICi 54401591. VBIPseDio141225_5059.

    Phylogenomic databases

    KOi K01971.
    OMAi AMERRTH.

    Enzyme and pathway databases

    BioCyci PDIO675635:GHMF-5036-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 55486 / DSM 44775 / JCM 13855 / CB1190Imported.

    Entry informationi

    Entry nameiF4CNA3_PSEUX
    AccessioniPrimary (citable) accession number: F4CNA3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3