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F4CFH6 (F4CFH6_SPHS2) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Sph21_2578 EMBL ADZ79129.1
OrganismSphingobacterium sp. (strain 21) [Complete proteome] [HAMAP] EMBL ADZ79129.1
Taxonomic identifier743722 [NCBI]
Taxonomic lineageBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaeSphingobacterium

Protein attributes

Sequence length905 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F4CFH6 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 0715E0840A4F9F80

FASTA905103,105
        10         20         30         40         50         60 
MPLDQYRNKR DFKKTSEPKS GKSPNRKQLT FVVQKHKASR LHYDFRLEMD GVLKSWAVPK 

        70         80         90        100        110        120 
GPSTDPQNKR LAMMVEDHPM DYRQFEGIIP KGQYGGGTVI VWDEGTYEPI EGLKSKKAQE 

       130        140        150        160        170        180 
KHLLEQLHKG SLKIRLHGHK LKGEYALVKT QGMGENGWLL IKHKDEFASK SDITKKDKSV 

       190        200        210        220        230        240 
LSDKALEEIE KSSNKVWQNG REKTVEKSRK TTQAKKSKNA DEHLADDVNE AGEPQKMDVP 

       250        260        270        280        290        300 
SLLKKAPEST IPKSIKPMKA TLIDEPFDDP DWLYEVKWDG YRAIAKVSKT DVKLISRNNI 

       310        320        330        340        350        360 
PFDKYYPLVD LLKGWRINAV IDGEIVVLDE KGLSDFGALQ NWRSEADGNL VYYVFDILWY 

       370        380        390        400        410        420 
EGKNLMGLPL VERQAILQDI LPTDDDRIRQ SKVFAARGID FFDAAEQVGL EGIIAKKADS 

       430        440        450        460        470        480 
KYTSDLRSKE WLKIKVQRRQ EVVIAGFTRN EGTSKAFSAL VMGVYDGKKL RYAGKVGTGF 

       490        500        510        520        530        540 
SDSKQKEMMK LFKPLITDRS PFDVEPDVDK PSRFRPQRLG AKPTWLKPEL VCEVNYAEVT 

       550        560        570        580        590        600 
SEGIFRQASF KGMREDKEAD DVVLEKAADT ESTVAEVEEE DKGTKHAIKP AKTERRTLLN 

       610        620        630        640        650        660 
PREETQTRKV NGKELKFTHL SKVYWPDDGI TKRDMFNYYY RIAEFILPYL KDRPMSLNRF 

       670        680        690        700        710        720 
PNGIKGPSFY QKDVKGKVPE WVSKTYPYTT SEGEHKEYLV GDDEATLLWM ASLGCIEMNP 

       730        740        750        760        770        780 
WFSRVQSPDN PDYCVIDLDP DKNTFEQVIE AAQEVRKVLD ALGVSSYPKT SGSTGIHIYI 

       790        800        810        820        830        840 
PLGAKYSYEQ SQLFAKVIVS LVHEQLPDFT SLKRKVSDRK GKMYLDFLQN RPGATIAGPY 

       850        860        870        880        890        900 
SLRPKPGATV SMPLAWDEVK RGLKMSDFTI HNAYDRLKET GDLFKGVLGK GIELNKIIKK 


AQNDL 

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References

[1]"Complete sequence of Sphingobacterium sp. 21."
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M. expand/collapse author list , Thelen M.P., Hugenholtz P., Woyke T.
Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 21.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002584 Genomic DNA. Translation: ADZ79129.1.
RefSeqYP_004317799.1. NC_015277.1.

3D structure databases

ProteinModelPortalF4CFH6.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADZ79129; ADZ79129; Sph21_2578.
GeneID10348337.
KEGGshg:Sph21_2578.
PATRIC47239190. VBISphSp165585_2763.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMANGLPDFQ.

Enzyme and pathway databases

BioCycSSP743722:GH04-2610-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4CFH6_SPHS2
AccessionPrimary (citable) accession number: F4CFH6
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: May 14, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)