F4CFH6 (F4CFH6_SPHS2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ADZ79129.1

Gene names

Ordered Locus Names:

Sph21_2578 EMBL ADZ79129.1

Organism

Sphingobacterium sp. (strain 21) [Complete proteome] [HAMAP] EMBL ADZ79129.1

Taxonomic identifier

743722 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Sphingobacteriaceae › Sphingobacterium

Protein attributes

Sequence length	905 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADZ79129.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4CFH6 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 0715E0840A4F9F80	FASTA	905	103,105
	10 20 30 40 50 60 MPLDQYRNKR DFKKTSEPKS GKSPNRKQLT FVVQKHKASR LHYDFRLEMD GVLKSWAVPK 70 80 90 100 110 120 GPSTDPQNKR LAMMVEDHPM DYRQFEGIIP KGQYGGGTVI VWDEGTYEPI EGLKSKKAQE 130 140 150 160 170 180 KHLLEQLHKG SLKIRLHGHK LKGEYALVKT QGMGENGWLL IKHKDEFASK SDITKKDKSV 190 200 210 220 230 240 LSDKALEEIE KSSNKVWQNG REKTVEKSRK TTQAKKSKNA DEHLADDVNE AGEPQKMDVP 250 260 270 280 290 300 SLLKKAPEST IPKSIKPMKA TLIDEPFDDP DWLYEVKWDG YRAIAKVSKT DVKLISRNNI 310 320 330 340 350 360 PFDKYYPLVD LLKGWRINAV IDGEIVVLDE KGLSDFGALQ NWRSEADGNL VYYVFDILWY 370 380 390 400 410 420 EGKNLMGLPL VERQAILQDI LPTDDDRIRQ SKVFAARGID FFDAAEQVGL EGIIAKKADS 430 440 450 460 470 480 KYTSDLRSKE WLKIKVQRRQ EVVIAGFTRN EGTSKAFSAL VMGVYDGKKL RYAGKVGTGF 490 500 510 520 530 540 SDSKQKEMMK LFKPLITDRS PFDVEPDVDK PSRFRPQRLG AKPTWLKPEL VCEVNYAEVT 550 560 570 580 590 600 SEGIFRQASF KGMREDKEAD DVVLEKAADT ESTVAEVEEE DKGTKHAIKP AKTERRTLLN 610 620 630 640 650 660 PREETQTRKV NGKELKFTHL SKVYWPDDGI TKRDMFNYYY RIAEFILPYL KDRPMSLNRF 670 680 690 700 710 720 PNGIKGPSFY QKDVKGKVPE WVSKTYPYTT SEGEHKEYLV GDDEATLLWM ASLGCIEMNP 730 740 750 760 770 780 WFSRVQSPDN PDYCVIDLDP DKNTFEQVIE AAQEVRKVLD ALGVSSYPKT SGSTGIHIYI 790 800 810 820 830 840 PLGAKYSYEQ SQLFAKVIVS LVHEQLPDFT SLKRKVSDRK GKMYLDFLQN RPGATIAGPY 850 860 870 880 890 900 SLRPKPGATV SMPLAWDEVK RGLKMSDFTI HNAYDRLKET GDLFKGVLGK GIELNKIIKK AQNDL

References

[1]

"Complete sequence of Sphingobacterium sp. 21." Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M. , Thelen M.P., Hugenholtz P., Woyke T. Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 21.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002584 Genomic DNA. Translation: ADZ79129.1.
RefSeq	YP_004317799.1. NC_015277.1.
3D structure databases
ProteinModelPortal	F4CFH6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADZ79129; ADZ79129; Sph21_2578.
GeneID	10348337.
KEGG	shg:Sph21_2578.
PATRIC	47239190. VBISphSp165585_2763.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
OMA	LAMMVED.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4CFH6_SPHS2

Accession

Primary (citable) accession number: F4CFH6

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)