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F4CFH6

- F4CFH6_SPHS2

UniProt

F4CFH6 - F4CFH6_SPHS2

Protein
Submitted name:

DNA ligase D

Gene

Sph21_2578

Organism
Sphingobacterium sp. (strain 21)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSSP743722:GH04-2610-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Sph21_2578Imported
    OrganismiSphingobacterium sp. (strain 21)Imported
    Taxonomic identifieri743722 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaeSphingobacterium
    ProteomesiUP000007808: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF4CFH6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiNGLPDFQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4CFH6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPLDQYRNKR DFKKTSEPKS GKSPNRKQLT FVVQKHKASR LHYDFRLEMD    50
    GVLKSWAVPK GPSTDPQNKR LAMMVEDHPM DYRQFEGIIP KGQYGGGTVI 100
    VWDEGTYEPI EGLKSKKAQE KHLLEQLHKG SLKIRLHGHK LKGEYALVKT 150
    QGMGENGWLL IKHKDEFASK SDITKKDKSV LSDKALEEIE KSSNKVWQNG 200
    REKTVEKSRK TTQAKKSKNA DEHLADDVNE AGEPQKMDVP SLLKKAPEST 250
    IPKSIKPMKA TLIDEPFDDP DWLYEVKWDG YRAIAKVSKT DVKLISRNNI 300
    PFDKYYPLVD LLKGWRINAV IDGEIVVLDE KGLSDFGALQ NWRSEADGNL 350
    VYYVFDILWY EGKNLMGLPL VERQAILQDI LPTDDDRIRQ SKVFAARGID 400
    FFDAAEQVGL EGIIAKKADS KYTSDLRSKE WLKIKVQRRQ EVVIAGFTRN 450
    EGTSKAFSAL VMGVYDGKKL RYAGKVGTGF SDSKQKEMMK LFKPLITDRS 500
    PFDVEPDVDK PSRFRPQRLG AKPTWLKPEL VCEVNYAEVT SEGIFRQASF 550
    KGMREDKEAD DVVLEKAADT ESTVAEVEEE DKGTKHAIKP AKTERRTLLN 600
    PREETQTRKV NGKELKFTHL SKVYWPDDGI TKRDMFNYYY RIAEFILPYL 650
    KDRPMSLNRF PNGIKGPSFY QKDVKGKVPE WVSKTYPYTT SEGEHKEYLV 700
    GDDEATLLWM ASLGCIEMNP WFSRVQSPDN PDYCVIDLDP DKNTFEQVIE 750
    AAQEVRKVLD ALGVSSYPKT SGSTGIHIYI PLGAKYSYEQ SQLFAKVIVS 800
    LVHEQLPDFT SLKRKVSDRK GKMYLDFLQN RPGATIAGPY SLRPKPGATV 850
    SMPLAWDEVK RGLKMSDFTI HNAYDRLKET GDLFKGVLGK GIELNKIIKK 900
    AQNDL 905
    Length:905
    Mass (Da):103,105
    Last modified:June 28, 2011 - v1
    Checksum:i0715E0840A4F9F80
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002584 Genomic DNA. Translation: ADZ79129.1.
    RefSeqiWP_013665850.1. NC_015277.1.
    YP_004317799.1. NC_015277.1.

    Genome annotation databases

    EnsemblBacteriaiADZ79129; ADZ79129; Sph21_2578.
    GeneIDi10348337.
    KEGGishg:Sph21_2578.
    PATRICi47239190. VBISphSp165585_2763.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002584 Genomic DNA. Translation: ADZ79129.1 .
    RefSeqi WP_013665850.1. NC_015277.1.
    YP_004317799.1. NC_015277.1.

    3D structure databases

    ProteinModelPortali F4CFH6.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADZ79129 ; ADZ79129 ; Sph21_2578 .
    GeneIDi 10348337.
    KEGGi shg:Sph21_2578.
    PATRICi 47239190. VBISphSp165585_2763.

    Phylogenomic databases

    KOi K01971.
    OMAi NGLPDFQ.

    Enzyme and pathway databases

    BioCyci SSP743722:GH04-2610-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Sphingobacterium sp. 21."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M.
      , Thelen M.P., Hugenholtz P., Woyke T.
      Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 21Imported.

    Entry informationi

    Entry nameiF4CFH6_SPHS2
    AccessioniPrimary (citable) accession number: F4CFH6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3