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F4CFH6

- F4CFH6_SPHS2

UniProt

F4CFH6 - F4CFH6_SPHS2

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Protein
Submitted name:

DNA ligase D

Gene

Sph21_2578

Organism
Sphingobacterium sp. (strain 21)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSP743722:GH04-2610-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Sph21_2578Imported
OrganismiSphingobacterium sp. (strain 21)Imported
Taxonomic identifieri743722 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaeSphingobacterium
ProteomesiUP000007808: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4CFH6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiNGLPDFQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4CFH6-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MPLDQYRNKR DFKKTSEPKS GKSPNRKQLT FVVQKHKASR LHYDFRLEMD
60 70 80 90 100
GVLKSWAVPK GPSTDPQNKR LAMMVEDHPM DYRQFEGIIP KGQYGGGTVI
110 120 130 140 150
VWDEGTYEPI EGLKSKKAQE KHLLEQLHKG SLKIRLHGHK LKGEYALVKT
160 170 180 190 200
QGMGENGWLL IKHKDEFASK SDITKKDKSV LSDKALEEIE KSSNKVWQNG
210 220 230 240 250
REKTVEKSRK TTQAKKSKNA DEHLADDVNE AGEPQKMDVP SLLKKAPEST
260 270 280 290 300
IPKSIKPMKA TLIDEPFDDP DWLYEVKWDG YRAIAKVSKT DVKLISRNNI
310 320 330 340 350
PFDKYYPLVD LLKGWRINAV IDGEIVVLDE KGLSDFGALQ NWRSEADGNL
360 370 380 390 400
VYYVFDILWY EGKNLMGLPL VERQAILQDI LPTDDDRIRQ SKVFAARGID
410 420 430 440 450
FFDAAEQVGL EGIIAKKADS KYTSDLRSKE WLKIKVQRRQ EVVIAGFTRN
460 470 480 490 500
EGTSKAFSAL VMGVYDGKKL RYAGKVGTGF SDSKQKEMMK LFKPLITDRS
510 520 530 540 550
PFDVEPDVDK PSRFRPQRLG AKPTWLKPEL VCEVNYAEVT SEGIFRQASF
560 570 580 590 600
KGMREDKEAD DVVLEKAADT ESTVAEVEEE DKGTKHAIKP AKTERRTLLN
610 620 630 640 650
PREETQTRKV NGKELKFTHL SKVYWPDDGI TKRDMFNYYY RIAEFILPYL
660 670 680 690 700
KDRPMSLNRF PNGIKGPSFY QKDVKGKVPE WVSKTYPYTT SEGEHKEYLV
710 720 730 740 750
GDDEATLLWM ASLGCIEMNP WFSRVQSPDN PDYCVIDLDP DKNTFEQVIE
760 770 780 790 800
AAQEVRKVLD ALGVSSYPKT SGSTGIHIYI PLGAKYSYEQ SQLFAKVIVS
810 820 830 840 850
LVHEQLPDFT SLKRKVSDRK GKMYLDFLQN RPGATIAGPY SLRPKPGATV
860 870 880 890 900
SMPLAWDEVK RGLKMSDFTI HNAYDRLKET GDLFKGVLGK GIELNKIIKK

AQNDL
Length:905
Mass (Da):103,105
Last modified:June 28, 2011 - v1
Checksum:i0715E0840A4F9F80
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002584 Genomic DNA. Translation: ADZ79129.1.
RefSeqiWP_013665850.1. NC_015277.1.
YP_004317799.1. NC_015277.1.

Genome annotation databases

EnsemblBacteriaiADZ79129; ADZ79129; Sph21_2578.
GeneIDi10348337.
KEGGishg:Sph21_2578.
PATRICi47239190. VBISphSp165585_2763.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002584 Genomic DNA. Translation: ADZ79129.1 .
RefSeqi WP_013665850.1. NC_015277.1.
YP_004317799.1. NC_015277.1.

3D structure databases

ProteinModelPortali F4CFH6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADZ79129 ; ADZ79129 ; Sph21_2578 .
GeneIDi 10348337.
KEGGi shg:Sph21_2578.
PATRICi 47239190. VBISphSp165585_2763.

Phylogenomic databases

KOi K01971.
OMAi NGLPDFQ.

Enzyme and pathway databases

BioCyci SSP743722:GH04-2610-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Sphingobacterium sp. 21."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M.
    , Thelen M.P., Hugenholtz P., Woyke T.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 21Imported.

Entry informationi

Entry nameiF4CFH6_SPHS2
AccessioniPrimary (citable) accession number: F4CFH6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: October 1, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3