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F4CD67 (F4CD67_SPHS2) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Sph21_1108 EMBL ADZ77678.1
OrganismSphingobacterium sp. (strain 21) [Complete proteome] [HAMAP] EMBL ADZ77678.1
Taxonomic identifier743722 [NCBI]
Taxonomic lineageBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaeSphingobacterium

Protein attributes

Sequence length532 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F4CD67 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 87F64E02459F3D58

FASTA53261,379
        10         20         30         40         50         60 
MRAFNELFEE IDRTTSTNAK VEALVRYFRS AHNQDLLWCV YLLMGKSTGR FVKTAILRQA 

        70         80         90        100        110        120 
AIQLSQLPAW LFEESYHVVG DLAETIALCL PPPLEPKAYT LNETMAFLHD LKNLSDEEME 

       130        140        150        160        170        180 
AALSSRWMHT PNNHRFVFNK LITGNFRMGA SKQLVIKALS ITFDKPESEM AHRLMGNWHP 

       190        200        210        220        230        240 
TTADVQQLLL TEMPKDERSF EPYPFYLAYQ LDKDPESLGN VDEWFIERKY DGIRGQIIVR 

       250        260        270        280        290        300 
NGSLYIWSRG EDLLTDKFPE FHPLADLLPN GTVIDGEILP FKDEKVLPFS VMQTRTGRKQ 

       310        320        330        340        350        360 
LSKKILADAP LIMICYDLLE YDGEDIRARP LETRRNLLVT LLEKLPRDIP LLISGIIPCD 

       370        380        390        400        410        420 
TWHDVARARE EARAYQCEGV MLKRKQSIYE TGRRRGNWWK WKVEPYTIDG VLIYGQRGHG 

       430        440        450        460        470        480 
RRANLYTDYT FAVWDNGELV PFAKAYSGLT DKEILEVDAW IKRHTIDKFG PVRSVTPTLV 

       490        500        510        520        530 
FELAFEGISS SPRHKSGIAL RFPRIVRWRK DKPAKEANTK ADLLALLKQQ KA 

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References

[1]"Complete sequence of Sphingobacterium sp. 21."
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M. expand/collapse author list , Thelen M.P., Hugenholtz P., Woyke T.
Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 21.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002584 Genomic DNA. Translation: ADZ77678.1.
RefSeqYP_004316348.1. NC_015277.1.

3D structure databases

ProteinModelPortalF4CD67.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADZ77678; ADZ77678; Sph21_1108.
GeneID10346850.
KEGGshg:Sph21_1108.
PATRIC47235988. VBISphSp165585_1188.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAWIRQNTI.

Enzyme and pathway databases

BioCycSSP743722:GH04-1123-MONOMER.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4CD67_SPHS2
AccessionPrimary (citable) accession number: F4CD67
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: October 16, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)