Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F4CD67

- F4CD67_SPHS2

UniProt

F4CD67 - F4CD67_SPHS2

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Sph21_1108

Organism
Sphingobacterium sp. (strain 21)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSSP743722:GH04-1123-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Sph21_1108Imported
    OrganismiSphingobacterium sp. (strain 21)Imported
    Taxonomic identifieri743722 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaeSphingobacterium
    ProteomesiUP000007808: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF4CD67.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiNRHKSGV.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4CD67-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRAFNELFEE IDRTTSTNAK VEALVRYFRS AHNQDLLWCV YLLMGKSTGR    50
    FVKTAILRQA AIQLSQLPAW LFEESYHVVG DLAETIALCL PPPLEPKAYT 100
    LNETMAFLHD LKNLSDEEME AALSSRWMHT PNNHRFVFNK LITGNFRMGA 150
    SKQLVIKALS ITFDKPESEM AHRLMGNWHP TTADVQQLLL TEMPKDERSF 200
    EPYPFYLAYQ LDKDPESLGN VDEWFIERKY DGIRGQIIVR NGSLYIWSRG 250
    EDLLTDKFPE FHPLADLLPN GTVIDGEILP FKDEKVLPFS VMQTRTGRKQ 300
    LSKKILADAP LIMICYDLLE YDGEDIRARP LETRRNLLVT LLEKLPRDIP 350
    LLISGIIPCD TWHDVARARE EARAYQCEGV MLKRKQSIYE TGRRRGNWWK 400
    WKVEPYTIDG VLIYGQRGHG RRANLYTDYT FAVWDNGELV PFAKAYSGLT 450
    DKEILEVDAW IKRHTIDKFG PVRSVTPTLV FELAFEGISS SPRHKSGIAL 500
    RFPRIVRWRK DKPAKEANTK ADLLALLKQQ KA 532
    Length:532
    Mass (Da):61,379
    Last modified:June 28, 2011 - v1
    Checksum:i87F64E02459F3D58
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002584 Genomic DNA. Translation: ADZ77678.1.
    RefSeqiWP_013664406.1. NC_015277.1.
    YP_004316348.1. NC_015277.1.

    Genome annotation databases

    EnsemblBacteriaiADZ77678; ADZ77678; Sph21_1108.
    GeneIDi10346850.
    KEGGishg:Sph21_1108.
    PATRICi47235988. VBISphSp165585_1188.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002584 Genomic DNA. Translation: ADZ77678.1 .
    RefSeqi WP_013664406.1. NC_015277.1.
    YP_004316348.1. NC_015277.1.

    3D structure databases

    ProteinModelPortali F4CD67.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADZ77678 ; ADZ77678 ; Sph21_1108 .
    GeneIDi 10346850.
    KEGGi shg:Sph21_1108.
    PATRICi 47235988. VBISphSp165585_1188.

    Phylogenomic databases

    KOi K01971.
    OMAi NRHKSGV.

    Enzyme and pathway databases

    BioCyci SSP743722:GH04-1123-MONOMER.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Sphingobacterium sp. 21."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M.
      , Thelen M.P., Hugenholtz P., Woyke T.
      Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 21Imported.

    Entry informationi

    Entry nameiF4CD67_SPHS2
    AccessioniPrimary (citable) accession number: F4CD67
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3