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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Sph21_1108

Organism
Sphingobacterium sp. (strain 21)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSP743722:GH04-1123-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Sph21_1108Imported
OrganismiSphingobacterium sp. (strain 21)Imported
Taxonomic identifieri743722 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaeSphingobacterium
ProteomesiUP000007808: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4CD67.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiWIRQNTI.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4CD67-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAFNELFEE IDRTTSTNAK VEALVRYFRS AHNQDLLWCV YLLMGKSTGR
60 70 80 90 100
FVKTAILRQA AIQLSQLPAW LFEESYHVVG DLAETIALCL PPPLEPKAYT
110 120 130 140 150
LNETMAFLHD LKNLSDEEME AALSSRWMHT PNNHRFVFNK LITGNFRMGA
160 170 180 190 200
SKQLVIKALS ITFDKPESEM AHRLMGNWHP TTADVQQLLL TEMPKDERSF
210 220 230 240 250
EPYPFYLAYQ LDKDPESLGN VDEWFIERKY DGIRGQIIVR NGSLYIWSRG
260 270 280 290 300
EDLLTDKFPE FHPLADLLPN GTVIDGEILP FKDEKVLPFS VMQTRTGRKQ
310 320 330 340 350
LSKKILADAP LIMICYDLLE YDGEDIRARP LETRRNLLVT LLEKLPRDIP
360 370 380 390 400
LLISGIIPCD TWHDVARARE EARAYQCEGV MLKRKQSIYE TGRRRGNWWK
410 420 430 440 450
WKVEPYTIDG VLIYGQRGHG RRANLYTDYT FAVWDNGELV PFAKAYSGLT
460 470 480 490 500
DKEILEVDAW IKRHTIDKFG PVRSVTPTLV FELAFEGISS SPRHKSGIAL
510 520 530
RFPRIVRWRK DKPAKEANTK ADLLALLKQQ KA
Length:532
Mass (Da):61,379
Last modified:June 28, 2011 - v1
Checksum:i87F64E02459F3D58
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002584 Genomic DNA. Translation: ADZ77678.1.
RefSeqiWP_013664406.1. NC_015277.1.
YP_004316348.1. NC_015277.1.

Genome annotation databases

EnsemblBacteriaiADZ77678; ADZ77678; Sph21_1108.
GeneIDi10346850.
KEGGishg:Sph21_1108.
PATRICi47235988. VBISphSp165585_1188.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002584 Genomic DNA. Translation: ADZ77678.1.
RefSeqiWP_013664406.1. NC_015277.1.
YP_004316348.1. NC_015277.1.

3D structure databases

ProteinModelPortaliF4CD67.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADZ77678; ADZ77678; Sph21_1108.
GeneIDi10346850.
KEGGishg:Sph21_1108.
PATRICi47235988. VBISphSp165585_1188.

Phylogenomic databases

KOiK10747.
OMAiWIRQNTI.

Enzyme and pathway databases

BioCyciSSP743722:GH04-1123-MONOMER.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Sphingobacterium sp. 21."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M.
    , Thelen M.P., Hugenholtz P., Woyke T.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 21Imported.

Entry informationi

Entry nameiF4CD67_SPHS2
AccessioniPrimary (citable) accession number: F4CD67
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: March 4, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.