SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

F4CD67

- F4CD67_SPHS2

UniProt

F4CD67 - F4CD67_SPHS2

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: ATP dependent DNA ligase
Gene
Sph21_1108
Organism
Sphingobacterium sp. (strain 21)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSP743722:GH04-1123-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Sph21_1108Imported
OrganismiSphingobacterium sp. (strain 21)Imported
Taxonomic identifieri743722 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaeSphingobacterium
ProteomesiUP000007808: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF4CD67.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiNRHKSGV.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4CD67-1 [UniParc]FASTAAdd to Basket

« Hide

MRAFNELFEE IDRTTSTNAK VEALVRYFRS AHNQDLLWCV YLLMGKSTGR    50
FVKTAILRQA AIQLSQLPAW LFEESYHVVG DLAETIALCL PPPLEPKAYT 100
LNETMAFLHD LKNLSDEEME AALSSRWMHT PNNHRFVFNK LITGNFRMGA 150
SKQLVIKALS ITFDKPESEM AHRLMGNWHP TTADVQQLLL TEMPKDERSF 200
EPYPFYLAYQ LDKDPESLGN VDEWFIERKY DGIRGQIIVR NGSLYIWSRG 250
EDLLTDKFPE FHPLADLLPN GTVIDGEILP FKDEKVLPFS VMQTRTGRKQ 300
LSKKILADAP LIMICYDLLE YDGEDIRARP LETRRNLLVT LLEKLPRDIP 350
LLISGIIPCD TWHDVARARE EARAYQCEGV MLKRKQSIYE TGRRRGNWWK 400
WKVEPYTIDG VLIYGQRGHG RRANLYTDYT FAVWDNGELV PFAKAYSGLT 450
DKEILEVDAW IKRHTIDKFG PVRSVTPTLV FELAFEGISS SPRHKSGIAL 500
RFPRIVRWRK DKPAKEANTK ADLLALLKQQ KA 532
Length:532
Mass (Da):61,379
Last modified:June 28, 2011 - v1
Checksum:i87F64E02459F3D58
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002584 Genomic DNA. Translation: ADZ77678.1.
RefSeqiWP_013664406.1. NC_015277.1.
YP_004316348.1. NC_015277.1.

Genome annotation databases

EnsemblBacteriaiADZ77678; ADZ77678; Sph21_1108.
GeneIDi10346850.
KEGGishg:Sph21_1108.
PATRICi47235988. VBISphSp165585_1188.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002584 Genomic DNA. Translation: ADZ77678.1 .
RefSeqi WP_013664406.1. NC_015277.1.
YP_004316348.1. NC_015277.1.

3D structure databases

ProteinModelPortali F4CD67.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADZ77678 ; ADZ77678 ; Sph21_1108 .
GeneIDi 10346850.
KEGGi shg:Sph21_1108.
PATRICi 47235988. VBISphSp165585_1188.

Phylogenomic databases

KOi K01971.
OMAi NRHKSGV.

Enzyme and pathway databases

BioCyci SSP743722:GH04-1123-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Sphingobacterium sp. 21."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Siebers A.K., Allgaier M.
    , Thelen M.P., Hugenholtz P., Woyke T.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 21.

Entry informationi

Entry nameiF4CD67_SPHS2
AccessioniPrimary (citable) accession number: F4CD67
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi