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F4BRF2

- F4BRF2_CARS1

UniProt

F4BRF2 - F4BRF2_CARS1

Protein

50S ribosomal protein L1

Gene

rplA

Organism
Carnobacterium sp. (strain 17-4)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.UniRule annotation
    Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. regulation of translation Source: UniProtKB-KW
    2. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    RepressorUniRule annotation, Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Keywords - Biological processi

    Translation regulationUniRule annotation

    Keywords - Ligandi

    RNA-binding, rRNA-bindingUniRule annotation, tRNA-bindingUniRule annotation

    Enzyme and pathway databases

    BioCyciCSP208596:GHHT-2458-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L1UniRule annotation
    Gene namesi
    Name:rplAUniRule annotationImported
    Ordered Locus Names:CAR_c24580Imported
    OrganismiCarnobacterium sp. (strain 17-4)Imported
    Taxonomic identifieri208596 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesCarnobacteriaceaeCarnobacterium
    ProteomesiUP000008304: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. large ribosomal subunit Source: InterPro

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L1P family.UniRule annotation

    Phylogenomic databases

    KOiK02863.

    Family and domain databases

    Gene3Di3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    HAMAPiMF_01318_B. Ribosomal_L1_B.
    InterProiIPR005878. Ribosom_L1_bac-type.
    IPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view]
    PfamiPF00687. Ribosomal_L1. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMiSSF56808. SSF56808. 1 hit.
    TIGRFAMsiTIGR01169. rplA_bact. 1 hit.
    PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4BRF2-1 [UniParc]FASTAAdd to Basket

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    MGGKTVITTI KEEKIMAKKS KQYLAAAEKV DVLKAYSLEE AVALIKDVDY    50
    AKFDATVEVA YRLGVDPKKA DQQIRGAVVL PNGTGKTQKV LVFAKGEKAK 100
    EAEAAGADYV GEAELVQKIN GGWFDFDVVV ATPDMMAEVG RLGRVLGPKG 150
    LMPNPKTGTV TMDVTKAINE IKAGKVTYRV DKAGNVHAPI GKVSFDNAKL 200
    VENFRTINDT MLRVKPSTAK GEYIKNITVT TTFGPGVKVD AGSF 244
    Length:244
    Mass (Da):26,184
    Last modified:June 28, 2011 - v1
    Checksum:i11A197ED19169732
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002563 Genomic DNA. Translation: AEB31113.1.
    RefSeqiWP_013712048.1. NC_015391.1.
    YP_004376129.1. NC_015391.1.

    Genome annotation databases

    EnsemblBacteriaiAEB31113; AEB31113; CAR_c24580.
    GeneIDi10442578.
    KEGGicrn:CAR_c24580.
    PATRICi54452466. VBICarSp108130_2440.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002563 Genomic DNA. Translation: AEB31113.1 .
    RefSeqi WP_013712048.1. NC_015391.1.
    YP_004376129.1. NC_015391.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB31113 ; AEB31113 ; CAR_c24580 .
    GeneIDi 10442578.
    KEGGi crn:CAR_c24580.
    PATRICi 54452466. VBICarSp108130_2440.

    Phylogenomic databases

    KOi K02863.

    Enzyme and pathway databases

    BioCyci CSP208596:GHHT-2458-MONOMER.

    Family and domain databases

    Gene3Di 3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    HAMAPi MF_01318_B. Ribosomal_L1_B.
    InterProi IPR005878. Ribosom_L1_bac-type.
    IPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view ]
    Pfami PF00687. Ribosomal_L1. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMi SSF56808. SSF56808. 1 hit.
    TIGRFAMsi TIGR01169. rplA_bact. 1 hit.
    PROSITEi PS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete gnome sequence of Carnobacterium sp. 17-4."
      Voget S., Klippel B., Daniel R., Antranikian G.
      J. Bacteriol. 193:3403-3404(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 17-4Imported.

    Entry informationi

    Entry nameiF4BRF2_CARS1
    AccessioniPrimary (citable) accession number: F4BRF2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3