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F4BRF2 (F4BRF2_CARS1) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L1 HAMAP-Rule MF_01318
Gene names
Name:rplA HAMAP-Rule MF_01318 EMBL AEB31113.1
Ordered Locus Names:CAR_c24580 EMBL AEB31113.1
OrganismCarnobacterium sp. (strain 17-4) [Complete proteome] [HAMAP] EMBL AEB31113.1
Taxonomic identifier208596 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesCarnobacteriaceaeCarnobacterium

Protein attributes

Sequence length244 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318

Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318

Sequence similarities

Belongs to the ribosomal protein L1P family. HAMAP-Rule MF_01318

Sequences

Sequence LengthMass (Da)Tools
F4BRF2 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 11A197ED19169732

FASTA24426,184
        10         20         30         40         50         60 
MGGKTVITTI KEEKIMAKKS KQYLAAAEKV DVLKAYSLEE AVALIKDVDY AKFDATVEVA 

        70         80         90        100        110        120 
YRLGVDPKKA DQQIRGAVVL PNGTGKTQKV LVFAKGEKAK EAEAAGADYV GEAELVQKIN 

       130        140        150        160        170        180 
GGWFDFDVVV ATPDMMAEVG RLGRVLGPKG LMPNPKTGTV TMDVTKAINE IKAGKVTYRV 

       190        200        210        220        230        240 
DKAGNVHAPI GKVSFDNAKL VENFRTINDT MLRVKPSTAK GEYIKNITVT TTFGPGVKVD 


AGSF 

« Hide

References

[1]"Complete genome sequence of Carnobacterium sp. 17-4."
Voget S., Klippel B., Daniel R., Antranikian G.
J. Bacteriol. 193:3403-3404(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 17-4 EMBL AEB31113.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002563 Genomic DNA. Translation: AEB31113.1.
RefSeqYP_004376129.1. NC_015391.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEB31113; AEB31113; CAR_c24580.
GeneID10442578.
KEGGcrn:CAR_c24580.
PATRIC54452466. VBICarSp108130_2440.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02863.

Enzyme and pathway databases

BioCycCSP208596:GHHT-2458-MONOMER.

Family and domain databases

Gene3D3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
HAMAPMF_01318_B. Ribosomal_L1_B.
InterProIPR005878. Ribosom_L1_bac-type.
IPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMSSF56808. SSF56808. 1 hit.
TIGRFAMsTIGR01169. rplA_bact. 1 hit.
PROSITEPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4BRF2_CARS1
AccessionPrimary (citable) accession number: F4BRF2
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)