ID   F4BMP5_CARS1            Unreviewed;       475 AA.
AC   F4BMP5;
DT   28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT   28-JUN-2011, sequence version 1.
DT   27-MAR-2024, entry version 55.
DE   SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:AEB29280.1};
GN   Name=sigL {ECO:0000313|EMBL:AEB29280.1};
GN   OrderedLocusNames=CAR_c05830 {ECO:0000313|EMBL:AEB29280.1};
OS   Carnobacterium sp. (strain 17-4).
OC   Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae;
OC   Carnobacterium.
OX   NCBI_TaxID=208596 {ECO:0000313|EMBL:AEB29280.1, ECO:0000313|Proteomes:UP000008304};
RN   [1] {ECO:0000313|EMBL:AEB29280.1, ECO:0000313|Proteomes:UP000008304}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=17-4 {ECO:0000313|EMBL:AEB29280.1,
RC   ECO:0000313|Proteomes:UP000008304};
RX   PubMed=21551290; DOI=10.1128/JB.05113-11;
RA   Voget S., Klippel B., Daniel R., Antranikian G.;
RT   "Complete gnome sequence of Carnobacterium sp. 17-4.";
RL   J. Bacteriol. 193:3403-3404(2011).
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|ARBA:ARBA00008798}.
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DR   EMBL; CP002563; AEB29280.1; -; Genomic_DNA.
DR   AlphaFoldDB; F4BMP5; -.
DR   STRING; 208596.CAR_c05830; -.
DR   KEGG; crn:CAR_c05830; -.
DR   eggNOG; COG1508; Bacteria.
DR   HOGENOM; CLU_020569_1_1_9; -.
DR   Proteomes; UP000008304; Chromosome.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   NCBIfam; TIGR02395; rpoN_sigma; 1.
DR   PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008304};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          113..298
FT                   /note="RNA polymerase sigma factor 54 core-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04963"
FT   DOMAIN          312..473
FT                   /note="RNA polymerase sigma factor 54 DNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04552"
FT   REGION          80..101
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   475 AA;  54274 MW;  22317D7C7EF0F5EF CRC64;
     MTFSFKVRYA MITLSKLINT RGENVLNFEQ NYTQLQKQQL TMTPQLQQAI QMLQYNRKDL
     VDFLKQKSLE NPFISISVKS APRTQGTSTE KYNSNQSRTN QSTSGTIWDT LATTASTTSL
     YSAVIEQIHL SFRDTALRDL IIWLAQYIDH NGYLTLSMDD AITLTQAEPL KLLDALTLLQ
     QLEPAGVGAR NLQECLMLQT ERNGQAPNLA YLILEEEFEA FANRKWDHIA KRYAISLSEV
     QEVSDFVKTL TPHPGAIFSN APTQYIRPDL SVKVTDNQEI VVHSIKTGLP VIVFQKEYYE
     ELSVLQDKEV SKFINEKQSE YEWLKKTLIQ REETILRIGI AIVNAQKEFF LSEDRPIQSL
     TLKSIAEELD IHESTVSRSI NGKYITTEFG VFELKKFFTN ALVTTSKDGN GSISSNQIKK
     KIELFIQDED PRKPLSDQKL VDLLEKGGIE ISRRTVTKYR EALSISSSPK RKRFD
//