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Protein
Submitted name:

RNA polymerase sigma-54 factor

Gene

sigL

Organism
Carnobacterium sp. (strain 17-4)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-54 factorImported
Gene namesi
Name:sigLImported
Ordered Locus Names:CAR_c05830Imported
OrganismiCarnobacterium sp. (strain 17-4)Imported
Taxonomic identifieri208596 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesCarnobacteriaceaeCarnobacterium
Proteomesi
  • UP000008304 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi208596.CAR_c05830

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini113 – 298Sigma54_CBDInterPro annotationAdd BLAST186
Domaini312 – 473Sigma54_DBDInterPro annotationAdd BLAST162

Phylogenomic databases

eggNOGiENOG4105DTW Bacteria
COG1508 LUCA
KOiK03092
OMAiACALVRK
OrthoDBiPOG091H02EW

Family and domain databases

Gene3Di1.10.10.1330, 1 hit
InterProiView protein in InterPro
IPR000394 RNA_pol_sigma_54
IPR007046 RNA_pol_sigma_54_core-bd
IPR007634 RNA_pol_sigma_54_DNA-bd
IPR038709 RpoN_core-bd_sf
PANTHERiPTHR32248 PTHR32248, 1 hit
PfamiView protein in Pfam
PF00309 Sigma54_AID, 1 hit
PF04963 Sigma54_CBD, 1 hit
PF04552 Sigma54_DBD, 1 hit
PIRSFiPIRSF000774 RpoN, 1 hit
PRINTSiPR00045 SIGMA54FCT
TIGRFAMsiTIGR02395 rpoN_sigma, 1 hit
PROSITEiView protein in PROSITE
PS00718 SIGMA54_2, 1 hit

Sequencei

Sequence statusi: Complete.

F4BMP5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFSFKVRYA MITLSKLINT RGENVLNFEQ NYTQLQKQQL TMTPQLQQAI
60 70 80 90 100
QMLQYNRKDL VDFLKQKSLE NPFISISVKS APRTQGTSTE KYNSNQSRTN
110 120 130 140 150
QSTSGTIWDT LATTASTTSL YSAVIEQIHL SFRDTALRDL IIWLAQYIDH
160 170 180 190 200
NGYLTLSMDD AITLTQAEPL KLLDALTLLQ QLEPAGVGAR NLQECLMLQT
210 220 230 240 250
ERNGQAPNLA YLILEEEFEA FANRKWDHIA KRYAISLSEV QEVSDFVKTL
260 270 280 290 300
TPHPGAIFSN APTQYIRPDL SVKVTDNQEI VVHSIKTGLP VIVFQKEYYE
310 320 330 340 350
ELSVLQDKEV SKFINEKQSE YEWLKKTLIQ REETILRIGI AIVNAQKEFF
360 370 380 390 400
LSEDRPIQSL TLKSIAEELD IHESTVSRSI NGKYITTEFG VFELKKFFTN
410 420 430 440 450
ALVTTSKDGN GSISSNQIKK KIELFIQDED PRKPLSDQKL VDLLEKGGIE
460 470
ISRRTVTKYR EALSISSSPK RKRFD
Length:475
Mass (Da):54,274
Last modified:June 28, 2011 - v1
Checksum:i22317D7C7EF0F5EF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002563 Genomic DNA Translation: AEB29280.1

Genome annotation databases

EnsemblBacteriaiAEB29280; AEB29280; CAR_c05830
KEGGicrn:CAR_c05830

Similar proteinsi

Entry informationi

Entry nameiF4BMP5_CARS1
AccessioniPrimary (citable) accession number: F4BMP5
Entry historyiIntegrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 20, 2018
This is version 37 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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