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Protein
Submitted name:

RNA polymerase sigma-54 factor

Gene

sigL

Organism
Carnobacterium sp. (strain 17-4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed RNA polymerase activity Source: InterPro
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
  4. sigma factor activity Source: InterPro

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciCSP208596:GHHT-583-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-54 factorImported
Gene namesi
Name:sigLImported
Ordered Locus Names:CAR_c05830Imported
OrganismiCarnobacterium sp. (strain 17-4)Imported
Taxonomic identifieri208596 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesCarnobacteriaceaeCarnobacterium
ProteomesiUP000008304 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK03092.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF00309. Sigma54_AID. 1 hit.
PF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4BMP5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFSFKVRYA MITLSKLINT RGENVLNFEQ NYTQLQKQQL TMTPQLQQAI
60 70 80 90 100
QMLQYNRKDL VDFLKQKSLE NPFISISVKS APRTQGTSTE KYNSNQSRTN
110 120 130 140 150
QSTSGTIWDT LATTASTTSL YSAVIEQIHL SFRDTALRDL IIWLAQYIDH
160 170 180 190 200
NGYLTLSMDD AITLTQAEPL KLLDALTLLQ QLEPAGVGAR NLQECLMLQT
210 220 230 240 250
ERNGQAPNLA YLILEEEFEA FANRKWDHIA KRYAISLSEV QEVSDFVKTL
260 270 280 290 300
TPHPGAIFSN APTQYIRPDL SVKVTDNQEI VVHSIKTGLP VIVFQKEYYE
310 320 330 340 350
ELSVLQDKEV SKFINEKQSE YEWLKKTLIQ REETILRIGI AIVNAQKEFF
360 370 380 390 400
LSEDRPIQSL TLKSIAEELD IHESTVSRSI NGKYITTEFG VFELKKFFTN
410 420 430 440 450
ALVTTSKDGN GSISSNQIKK KIELFIQDED PRKPLSDQKL VDLLEKGGIE
460 470
ISRRTVTKYR EALSISSSPK RKRFD
Length:475
Mass (Da):54,274
Last modified:June 28, 2011 - v1
Checksum:i22317D7C7EF0F5EF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002563 Genomic DNA. Translation: AEB29280.1.
RefSeqiWP_013710222.1. NC_015391.1.
YP_004374296.1. NC_015391.1.

Genome annotation databases

EnsemblBacteriaiAEB29280; AEB29280; CAR_c05830.
KEGGicrn:CAR_c05830.
PATRICi54448679. VBICarSp108130_0589.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002563 Genomic DNA. Translation: AEB29280.1.
RefSeqiWP_013710222.1. NC_015391.1.
YP_004374296.1. NC_015391.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB29280; AEB29280; CAR_c05830.
KEGGicrn:CAR_c05830.
PATRICi54448679. VBICarSp108130_0589.

Phylogenomic databases

KOiK03092.

Enzyme and pathway databases

BioCyciCSP208596:GHHT-583-MONOMER.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF00309. Sigma54_AID. 1 hit.
PF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Carnobacterium sp. 17-4."
    Voget S., Klippel B., Daniel R., Antranikian G.
    J. Bacteriol. 193:3403-3404(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 17-4Imported.

Entry informationi

Entry nameiF4BMP5_CARS1
AccessioniPrimary (citable) accession number: F4BMP5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 1, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.