F4BMP5 (F4BMP5_CARS1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase sigma-54 factor EMBL AEB29280.1

Gene names

Name:	sigL EMBL AEB29280.1
Ordered Locus Names:	CAR_c05830 EMBL AEB29280.1

Organism

Carnobacterium sp. (strain 17-4) [Complete proteome] [HAMAP] EMBL AEB29280.1

Taxonomic identifier

208596 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Lactobacillales › Carnobacteriaceae › Carnobacterium

Protein attributes

Sequence length	475 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4BMP5 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 22317D7C7EF0F5EF	FASTA	475	54,274
	10 20 30 40 50 60 MTFSFKVRYA MITLSKLINT RGENVLNFEQ NYTQLQKQQL TMTPQLQQAI QMLQYNRKDL 70 80 90 100 110 120 VDFLKQKSLE NPFISISVKS APRTQGTSTE KYNSNQSRTN QSTSGTIWDT LATTASTTSL 130 140 150 160 170 180 YSAVIEQIHL SFRDTALRDL IIWLAQYIDH NGYLTLSMDD AITLTQAEPL KLLDALTLLQ 190 200 210 220 230 240 QLEPAGVGAR NLQECLMLQT ERNGQAPNLA YLILEEEFEA FANRKWDHIA KRYAISLSEV 250 260 270 280 290 300 QEVSDFVKTL TPHPGAIFSN APTQYIRPDL SVKVTDNQEI VVHSIKTGLP VIVFQKEYYE 310 320 330 340 350 360 ELSVLQDKEV SKFINEKQSE YEWLKKTLIQ REETILRIGI AIVNAQKEFF LSEDRPIQSL 370 380 390 400 410 420 TLKSIAEELD IHESTVSRSI NGKYITTEFG VFELKKFFTN ALVTTSKDGN GSISSNQIKK 430 440 450 460 470 KIELFIQDED PRKPLSDQKL VDLLEKGGIE ISRRTVTKYR EALSISSSPK RKRFD

References

[1]	"Complete genome sequence of Carnobacterium sp. 17-4." Voget S., Klippel B., Daniel R., Antranikian G. J. Bacteriol. 193:3403-3404(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 17-4 EMBL AEB29280.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002563 Genomic DNA. Translation: AEB29280.1.
RefSeq	YP_004374296.1. NC_015391.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEB29280; AEB29280; CAR_c05830.
GeneID	10440703.
KEGG	crn:CAR_c05830.
PATRIC	54448679. VBICarSp108130_0589.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K03092.
Enzyme and pathway databases
BioCyc	CSP208596:GHHT-583-MONOMER.
Family and domain databases
InterPro	IPR000394. RNA_pol_sigma_54. IPR007046. RNA_pol_sigma_54_core-bd. IPR007634. RNA_pol_sigma_54_DNA-bd. [Graphical view]
Pfam	PF00309. Sigma54_AID. 1 hit. PF04963. Sigma54_CBD. 1 hit. PF04552. Sigma54_DBD. 1 hit. [Graphical view]
PIRSF	PIRSF000774. RpoN. 1 hit.
PRINTS	PR00045. SIGMA54FCT.
TIGRFAMs	TIGR02395. rpoN_sigma. 1 hit.
PROSITE	PS00718. SIGMA54_2. 1 hit. PS50044. SIGMA54_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4BMP5_CARS1

Accession

Primary (citable) accession number: F4BMP5

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)