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F4BMP5

- F4BMP5_CARS1

UniProt

F4BMP5 - F4BMP5_CARS1

Protein
Submitted name:

RNA polymerase sigma-54 factor

Gene

sigL

Organism
Carnobacterium sp. (strain 17-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. DNA-directed RNA polymerase activity Source: InterPro
    3. sequence-specific DNA binding transcription factor activity Source: InterPro
    4. sigma factor activity Source: InterPro

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Enzyme and pathway databases

    BioCyciCSP208596:GHHT-583-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase sigma-54 factorImported
    Gene namesi
    Name:sigLImported
    Ordered Locus Names:CAR_c05830Imported
    OrganismiCarnobacterium sp. (strain 17-4)Imported
    Taxonomic identifieri208596 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesCarnobacteriaceaeCarnobacterium
    ProteomesiUP000008304: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK03092.

    Family and domain databases

    InterProiIPR000394. RNA_pol_sigma_54.
    IPR007046. RNA_pol_sigma_54_core-bd.
    IPR007634. RNA_pol_sigma_54_DNA-bd.
    [Graphical view]
    PfamiPF00309. Sigma54_AID. 1 hit.
    PF04963. Sigma54_CBD. 1 hit.
    PF04552. Sigma54_DBD. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000774. RpoN. 1 hit.
    PRINTSiPR00045. SIGMA54FCT.
    TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
    PROSITEiPS00718. SIGMA54_2. 1 hit.
    PS50044. SIGMA54_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4BMP5-1 [UniParc]FASTAAdd to Basket

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    MTFSFKVRYA MITLSKLINT RGENVLNFEQ NYTQLQKQQL TMTPQLQQAI    50
    QMLQYNRKDL VDFLKQKSLE NPFISISVKS APRTQGTSTE KYNSNQSRTN 100
    QSTSGTIWDT LATTASTTSL YSAVIEQIHL SFRDTALRDL IIWLAQYIDH 150
    NGYLTLSMDD AITLTQAEPL KLLDALTLLQ QLEPAGVGAR NLQECLMLQT 200
    ERNGQAPNLA YLILEEEFEA FANRKWDHIA KRYAISLSEV QEVSDFVKTL 250
    TPHPGAIFSN APTQYIRPDL SVKVTDNQEI VVHSIKTGLP VIVFQKEYYE 300
    ELSVLQDKEV SKFINEKQSE YEWLKKTLIQ REETILRIGI AIVNAQKEFF 350
    LSEDRPIQSL TLKSIAEELD IHESTVSRSI NGKYITTEFG VFELKKFFTN 400
    ALVTTSKDGN GSISSNQIKK KIELFIQDED PRKPLSDQKL VDLLEKGGIE 450
    ISRRTVTKYR EALSISSSPK RKRFD 475
    Length:475
    Mass (Da):54,274
    Last modified:June 28, 2011 - v1
    Checksum:i22317D7C7EF0F5EF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002563 Genomic DNA. Translation: AEB29280.1.
    RefSeqiWP_013710222.1. NC_015391.1.
    YP_004374296.1. NC_015391.1.

    Genome annotation databases

    EnsemblBacteriaiAEB29280; AEB29280; CAR_c05830.
    GeneIDi10440703.
    KEGGicrn:CAR_c05830.
    PATRICi54448679. VBICarSp108130_0589.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002563 Genomic DNA. Translation: AEB29280.1 .
    RefSeqi WP_013710222.1. NC_015391.1.
    YP_004374296.1. NC_015391.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEB29280 ; AEB29280 ; CAR_c05830 .
    GeneIDi 10440703.
    KEGGi crn:CAR_c05830.
    PATRICi 54448679. VBICarSp108130_0589.

    Phylogenomic databases

    KOi K03092.

    Enzyme and pathway databases

    BioCyci CSP208596:GHHT-583-MONOMER.

    Family and domain databases

    InterProi IPR000394. RNA_pol_sigma_54.
    IPR007046. RNA_pol_sigma_54_core-bd.
    IPR007634. RNA_pol_sigma_54_DNA-bd.
    [Graphical view ]
    Pfami PF00309. Sigma54_AID. 1 hit.
    PF04963. Sigma54_CBD. 1 hit.
    PF04552. Sigma54_DBD. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000774. RpoN. 1 hit.
    PRINTSi PR00045. SIGMA54FCT.
    TIGRFAMsi TIGR02395. rpoN_sigma. 1 hit.
    PROSITEi PS00718. SIGMA54_2. 1 hit.
    PS50044. SIGMA54_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete gnome sequence of Carnobacterium sp. 17-4."
      Voget S., Klippel B., Daniel R., Antranikian G.
      J. Bacteriol. 193:3403-3404(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 17-4Imported.

    Entry informationi

    Entry nameiF4BMP5_CARS1
    AccessioniPrimary (citable) accession number: F4BMP5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3