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Protein
Submitted name:

Alpha amylase catalytic region

Gene

CAR_c00170

Organism
Carnobacterium sp. (strain 17-4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi104Calcium 1UniRule annotation1
Metal bindingi187Calcium 2UniRule annotation1
Metal bindingi198Calcium 1UniRule annotation1
Metal bindingi204Calcium 1UniRule annotation1
Metal bindingi206Calcium 2UniRule annotation1
Active sitei235NucleophileUniRule annotation1
Metal bindingi239Calcium 1; via carbonyl oxygenUniRule annotation1
Active sitei265Proton donorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:CAR_c00170Imported
OrganismiCarnobacterium sp. (strain 17-4)Imported
Taxonomic identifieri208596 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesCarnobacteriaceaeCarnobacterium
Proteomesi
  • UP000008304 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi208596.CAR_c00170.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 393AamyInterPro annotationAdd BLAST389

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiPOG091H0HQ3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

F4BL87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYKNGLMMQY FEWYVENDGK HWKRLKEDAK HLHEIGVTSV WIPPCFKGMD
60 70 80 90 100
KNDNGYGIYD LYDLGEFDQK GTVRTKYGTK EELIAAIEEL HKYEIQVYAD
110 120 130 140 150
IVLNHKAGAD GTERFKAVEV NPDDRNQKIS EAYEIEGWTE FTFPGRKGKY
160 170 180 190 200
SDFHWHWYHF SGTDYNQENE KKAIYRIEGQ HKGWADDETV DNEYGNYDYL
210 220 230 240 250
MFADIDYSHP EVVEETKKWA NWFIEETGVD GFRLDAVKHI NEKFIYELRE
260 270 280 290 300
SIEANFGRQF FIVGEYWDQN YTNLNSYLDS QDYKLDLFDV GLHHQLEKAS
310 320 330 340 350
KMGQNFDLTH LFDQTLIKNN PMQAVTFVDN HDSQPNQSLE SFVEPWFKPI
360 370 380 390 400
AYGVILLRKE GYPVLFYGDY YGIKGENPIE PHREVIDKLL YVKKHYAYGE
410 420 430 440 450
QTDYFDHHNC IGWTRSGNEE YPIGCSIVIS NSDAGYKDMF VGKEKVGFVY
460 470 480
EDYLGNCAET VTIDEEGNGH FLVEAGSISV WVNRKE
Length:486
Mass (Da):56,997
Last modified:June 28, 2011 - v1
Checksum:i2F3D760C52878584
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002563 Genomic DNA. Translation: AEB28768.1.
RefSeqiWP_013709711.1. NC_015391.1.

Genome annotation databases

EnsemblBacteriaiAEB28768; AEB28768; CAR_c00170.
KEGGicrn:CAR_c00170.
PATRICi54447539. VBICarSp108130_0071.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002563 Genomic DNA. Translation: AEB28768.1.
RefSeqiWP_013709711.1. NC_015391.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi208596.CAR_c00170.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEB28768; AEB28768; CAR_c00170.
KEGGicrn:CAR_c00170.
PATRICi54447539. VBICarSp108130_0071.

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiPOG091H0HQ3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiF4BL87_CARS1
AccessioniPrimary (citable) accession number: F4BL87
Entry historyiIntegrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: February 15, 2017
This is version 33 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.