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F4B158

- F4B158_DOKS4

UniProt

F4B158 - F4B158_DOKS4

Protein

Alanine racemase

Gene

Krodi_1313

Organism
Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    • Comment

    Functioni

    Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

    Catalytic activityi

    L-alanine = D-alanine.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei35 – 351Proton acceptor; specific for D-alanineUniRule annotation
    Binding sitei133 – 1331SubstrateUniRule annotation
    Active sitei261 – 2611Proton acceptor; specific for L-alanineUniRule annotation
    Binding sitei310 – 3101Substrate; via amide nitrogenUniRule annotation

    GO - Molecular functioni

    1. alanine racemase activity Source: UniProtKB-HAMAP
    2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-alanine biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciKSP983548:GHAF-1330-MONOMER.
    UniPathwayiUPA00042; UER00497.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:Krodi_1313Imported
    OrganismiDokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))Imported
    Taxonomic identifieri983548 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeDokdonia
    ProteomesiUP000008290: Chromosome

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei35 – 351N6-(pyridoxal phosphate)lysineUniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliF4B158.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the alanine racemase family.UniRule annotation

    Phylogenomic databases

    KOiK01775.

    Family and domain databases

    Gene3Di2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPiMF_01201. Ala_racemase.
    InterProiIPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view]
    PfamiPF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view]
    PRINTSiPR00992. ALARACEMASE.
    SMARTiSM01005. Ala_racemase_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsiTIGR00492. alr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    F4B158-1 [UniParc]FASTAAdd to Basket

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    MAITRLEIDL AALRHNYSYL RKKVAPSVKM MAVVKAFGYG SDAGAVAQEL    50
    EMLGVDYFAV AYVSEGIALR DAGITTPILV LHPQPDTFDE LIERCLEPSI 100
    YSIRMMELFT AFAKGKGQEN YPIHLKFNTG LNRLGFLNTD VSWILDRLRE 150
    NVSVKVASLF SHLVASEDPA EEEFTLNQIL QFTNISKELL QALDYVPFMH 200
    MTNTSGVINY HRAHFDCVRI GIGLYGYGNS KEDTKKLKPV ARLKSVISQI 250
    HHIKPGQSIG YNRAYKATEE IVTATLPIGH ADGISRSLGN GVGYVMIAGQ 300
    KAPIVGNVCM DMLMVDITGI SCKEGDDVEV FGETTSAETL AGEMQSISYE 350
    LLTAIGQRVK RVILR 365
    Length:365
    Mass (Da):40,302
    Last modified:June 28, 2011 - v1
    Checksum:i69D66941D2EA12D8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002528 Genomic DNA. Translation: AEE19296.1.
    RefSeqiWP_013750804.1. NC_015496.1.
    YP_004430564.1. NC_015496.1.

    Genome annotation databases

    EnsemblBacteriaiAEE19296; AEE19296; Krodi_1313.
    GeneIDi10568354.
    KEGGikdi:Krodi_1313.
    PATRICi54569739. VBIKroSp190710_1354.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002528 Genomic DNA. Translation: AEE19296.1 .
    RefSeqi WP_013750804.1. NC_015496.1.
    YP_004430564.1. NC_015496.1.

    3D structure databases

    ProteinModelPortali F4B158.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEE19296 ; AEE19296 ; Krodi_1313 .
    GeneIDi 10568354.
    KEGGi kdi:Krodi_1313.
    PATRICi 54569739. VBIKroSp190710_1354.

    Phylogenomic databases

    KOi K01775.

    Enzyme and pathway databases

    UniPathwayi UPA00042 ; UER00497 .
    BioCyci KSP983548:GHAF-1330-MONOMER.

    Family and domain databases

    Gene3Di 2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPi MF_01201. Ala_racemase.
    InterProi IPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view ]
    Pfami PF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view ]
    PRINTSi PR00992. ALARACEMASE.
    SMARTi SM01005. Ala_racemase_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsi TIGR00492. alr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
      Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
      , Abe F., Horikoshi K., Keller M., Antranikian G.
      J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 4H-3-7-5Imported.
    2. "Complete sequence of Krokinobacter diaphorus 4H-3-7-5."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 4H-3-7-5Imported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 4H-3-7-5.

    Entry informationi

    Entry nameiF4B158_DOKS4
    AccessioniPrimary (citable) accession number: F4B158
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3