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F4AZL8

- F4AZL8_DOKS4

UniProt

F4AZL8 - F4AZL8_DOKS4

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Protein
Submitted name: Alpha amylase catalytic region
Gene
Krodi_2139
Organism
Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciKSP983548:GHAF-2181-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Krodi_2139Imported
OrganismiDokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))Imported
Taxonomic identifieri983548 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeDokdonia
ProteomesiUP000008290: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 PredictedImported
Add
BLAST
Chaini22 – 556535 PredictedImported
PRO_5000737944Add
BLAST

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F4AZL8-1 [UniParc]FASTAAdd to Basket

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MNIKSLVALL LVILSVSSCK EQETALTQVD TQEKNPFFWE AANMYFLLTD    50
RFNNGDTSND VNFERTQDAA VLRDFMGGDI KGITQKIEDG YFTDLGINAI 100
WFTPVVEQVH GAVDEGTGVT YGYHGYWTKD WTSLDPNFGT REDLQSLVSA 150
AHQKDIRIVM DVVLNHTGPV TEKDPFWGED WARENPNCAF STYENTTACS 200
LVENLPDILT ESDQEVALPA TLVAKWKSEG RYDEEMAELD SYFTTNDLKK 250
TPRNYIIKWL TDYIRDFGVD AFRVDTTKHV DEASWVALRA QADKAFADYK 300
ANNEDKVMDN NDFFMFGEVY NYSIDGGRAY DFGDKKVDYF ANGFDNLINF 350
QFKYDAQGSY EQLFSKYAVI KDSIFSDKSF VNYATSHDDG QPFDKDRNKA 400
IETGTKLLLT TGISQIYYGD ETARDLTIDG TDGDATLRSF MNWDSINTAP 450
TDEILAHWQK LGTFRRDHPS VGAGTHKMLS AAPYIFKRSF NKNGMTDTVV 500
VGLDLNIGKK DIVVGNAFAK AQTVKDTYSG QEASIIDGKI TLDTPYDIVL 550
LEVVKN 556
Length:556
Mass (Da):62,674
Last modified:June 28, 2011 - v1
Checksum:i0591507BA16FF96C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002528 Genomic DNA. Translation: AEE20121.1.
RefSeqiWP_013751628.1. NC_015496.1.
YP_004431389.1. NC_015496.1.

Genome annotation databases

EnsemblBacteriaiAEE20121; AEE20121; Krodi_2139.
GeneIDi10569205.
KEGGikdi:Krodi_2139.
PATRICi54571503. VBIKroSp190710_2206.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002528 Genomic DNA. Translation: AEE20121.1 .
RefSeqi WP_013751628.1. NC_015496.1.
YP_004431389.1. NC_015496.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEE20121 ; AEE20121 ; Krodi_2139 .
GeneIDi 10569205.
KEGGi kdi:Krodi_2139.
PATRICi 54571503. VBIKroSp190710_2206.

Phylogenomic databases

KOi K01176.

Enzyme and pathway databases

BioCyci KSP983548:GHAF-2181-MONOMER.

Family and domain databases

Gene3Di 3.20.20.80. 2 hits.
InterProi IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 2 hits.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    , Abe F., Horikoshi K., Keller M., Antranikian G.
    J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7-5Imported.
  2. "Complete sequence of Krokinobacter diaphorus 4H-3-7-5."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7-5.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 4H-3-7-5.

Entry informationi

Entry nameiF4AZL8_DOKS4
AccessioniPrimary (citable) accession number: F4AZL8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 3, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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