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F4AZL8

- F4AZL8_DOKS4

UniProt

F4AZL8 - F4AZL8_DOKS4

Protein
Submitted name:

Alpha amylase catalytic region

Gene

Krodi_2139

Organism
Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. catalytic activity Source: InterPro
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciKSP983548:GHAF-2181-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha amylase catalytic regionImported
    Gene namesi
    Ordered Locus Names:Krodi_2139Imported
    OrganismiDokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))Imported
    Taxonomic identifieri983548 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeDokdonia
    ProteomesiUP000008290: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2121 PotentialImportedAdd
    BLAST
    Chaini22 – 556535 PotentialImportedPRO_5000737944Add
    BLAST

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    KOiK01176.

    Family and domain databases

    Gene3Di3.20.20.80. 2 hits.
    InterProiIPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    F4AZL8-1 [UniParc]FASTAAdd to Basket

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    MNIKSLVALL LVILSVSSCK EQETALTQVD TQEKNPFFWE AANMYFLLTD    50
    RFNNGDTSND VNFERTQDAA VLRDFMGGDI KGITQKIEDG YFTDLGINAI 100
    WFTPVVEQVH GAVDEGTGVT YGYHGYWTKD WTSLDPNFGT REDLQSLVSA 150
    AHQKDIRIVM DVVLNHTGPV TEKDPFWGED WARENPNCAF STYENTTACS 200
    LVENLPDILT ESDQEVALPA TLVAKWKSEG RYDEEMAELD SYFTTNDLKK 250
    TPRNYIIKWL TDYIRDFGVD AFRVDTTKHV DEASWVALRA QADKAFADYK 300
    ANNEDKVMDN NDFFMFGEVY NYSIDGGRAY DFGDKKVDYF ANGFDNLINF 350
    QFKYDAQGSY EQLFSKYAVI KDSIFSDKSF VNYATSHDDG QPFDKDRNKA 400
    IETGTKLLLT TGISQIYYGD ETARDLTIDG TDGDATLRSF MNWDSINTAP 450
    TDEILAHWQK LGTFRRDHPS VGAGTHKMLS AAPYIFKRSF NKNGMTDTVV 500
    VGLDLNIGKK DIVVGNAFAK AQTVKDTYSG QEASIIDGKI TLDTPYDIVL 550
    LEVVKN 556
    Length:556
    Mass (Da):62,674
    Last modified:June 28, 2011 - v1
    Checksum:i0591507BA16FF96C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002528 Genomic DNA. Translation: AEE20121.1.
    RefSeqiWP_013751628.1. NC_015496.1.
    YP_004431389.1. NC_015496.1.

    Genome annotation databases

    EnsemblBacteriaiAEE20121; AEE20121; Krodi_2139.
    GeneIDi10569205.
    KEGGikdi:Krodi_2139.
    PATRICi54571503. VBIKroSp190710_2206.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002528 Genomic DNA. Translation: AEE20121.1 .
    RefSeqi WP_013751628.1. NC_015496.1.
    YP_004431389.1. NC_015496.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEE20121 ; AEE20121 ; Krodi_2139 .
    GeneIDi 10569205.
    KEGGi kdi:Krodi_2139.
    PATRICi 54571503. VBIKroSp190710_2206.

    Phylogenomic databases

    KOi K01176.

    Enzyme and pathway databases

    BioCyci KSP983548:GHAF-2181-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 2 hits.
    InterProi IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
      Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
      , Abe F., Horikoshi K., Keller M., Antranikian G.
      J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 4H-3-7-5Imported.
    2. "Complete sequence of Krokinobacter diaphorus 4H-3-7-5."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 4H-3-7-5Imported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 4H-3-7-5.

    Entry informationi

    Entry nameiF4AZL8_DOKS4
    AccessioniPrimary (citable) accession number: F4AZL8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3