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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Krodi_2139

Organism
Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciKSP983548:GHAF-2181-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Krodi_2139Imported
OrganismiDokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))Imported
Taxonomic identifieri983548 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeDokdonia
ProteomesiUP000008290 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 PotentialImportedAdd
BLAST
Chaini22 – 556535 PotentialImportedPRO_5000737944Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi983548.Krodi_2139.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F4AZL8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIKSLVALL LVILSVSSCK EQETALTQVD TQEKNPFFWE AANMYFLLTD
60 70 80 90 100
RFNNGDTSND VNFERTQDAA VLRDFMGGDI KGITQKIEDG YFTDLGINAI
110 120 130 140 150
WFTPVVEQVH GAVDEGTGVT YGYHGYWTKD WTSLDPNFGT REDLQSLVSA
160 170 180 190 200
AHQKDIRIVM DVVLNHTGPV TEKDPFWGED WARENPNCAF STYENTTACS
210 220 230 240 250
LVENLPDILT ESDQEVALPA TLVAKWKSEG RYDEEMAELD SYFTTNDLKK
260 270 280 290 300
TPRNYIIKWL TDYIRDFGVD AFRVDTTKHV DEASWVALRA QADKAFADYK
310 320 330 340 350
ANNEDKVMDN NDFFMFGEVY NYSIDGGRAY DFGDKKVDYF ANGFDNLINF
360 370 380 390 400
QFKYDAQGSY EQLFSKYAVI KDSIFSDKSF VNYATSHDDG QPFDKDRNKA
410 420 430 440 450
IETGTKLLLT TGISQIYYGD ETARDLTIDG TDGDATLRSF MNWDSINTAP
460 470 480 490 500
TDEILAHWQK LGTFRRDHPS VGAGTHKMLS AAPYIFKRSF NKNGMTDTVV
510 520 530 540 550
VGLDLNIGKK DIVVGNAFAK AQTVKDTYSG QEASIIDGKI TLDTPYDIVL

LEVVKN
Length:556
Mass (Da):62,674
Last modified:June 28, 2011 - v1
Checksum:i0591507BA16FF96C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002528 Genomic DNA. Translation: AEE20121.1.
RefSeqiWP_013751628.1. NC_015496.1.

Genome annotation databases

EnsemblBacteriaiAEE20121; AEE20121; Krodi_2139.
KEGGikdi:Krodi_2139.
PATRICi54571503. VBIKroSp190710_2206.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002528 Genomic DNA. Translation: AEE20121.1.
RefSeqiWP_013751628.1. NC_015496.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi983548.Krodi_2139.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEE20121; AEE20121; Krodi_2139.
KEGGikdi:Krodi_2139.
PATRICi54571503. VBIKroSp190710_2206.

Phylogenomic databases

KOiK01176.

Enzyme and pathway databases

BioCyciKSP983548:GHAF-2181-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    , Abe F., Horikoshi K., Keller M., Antranikian G.
    J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7-5Imported.
  2. "Complete sequence of Krokinobacter diaphorus 4H-3-7-5."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7-5Imported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 4H-3-7-5.

Entry informationi

Entry nameiF4AZL8_DOKS4
AccessioniPrimary (citable) accession number: F4AZL8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: July 22, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.