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F4AVH1

- F4AVH1_DOKS4

UniProt

F4AVH1 - F4AVH1_DOKS4

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Krodi_1004
Organism
Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciKSP983548:GHAF-1019-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Krodi_1004Imported
OrganismiDokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))Imported
Taxonomic identifieri983548 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeDokdonia
ProteomesiUP000008290: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4AVH1-1 [UniParc]FASTAAdd to Basket

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MKLFAALIKT LDSTNKTNEK VKALAHYFRE ASDKDKVWTI AILSHRRPPR    50
PVNTTLLREW ASELSNIPLW LFEESYHIVG DLAETIALVV PAATASSEKS 100
LTQFLEEMIS LKRKTDEEKK EYLFDNWANL NYYERFVFTK LITGGFRIGV 150
SQKLMTRALS QATDIEEDVL AYKLMGDWKP QTVTFHDLVI EEDASQEFSR 200
PYPFYLAYAV EDEPSALGDV TDFLAEHKWD GIRSQTIFRN GEIFIWSRGE 250
ELVTDKYPEL EILKEHIPDG TVIDGELLPF YDGQIGTFND LQARIGRKTV 300
SKKMLKEVPV IIKAYDILEW EGKDLRETAF AKRRTILESL YRNITDKELP 350
IGISETMEFD SWEAMAQERD RSREMRSEGL MIKRKDSPYR VGRKKGDWWK 400
WKVDPLTIDA VLTYAMRGHG RRSNLFTDYT FGLWNEDKTE LVTFAKAYSG 450
LTDAEFRKVD NWIKKNTLER FGPVRSVTPH HVFEIAFEGI ALSKRHKSGI 500
ATRFPRMLRW RHDKQIEDAN TLEDLKGMIP SAAKESLPPT K 541
Length:541
Mass (Da):62,734
Last modified:June 28, 2011 - v1
Checksum:iEDEA97A40524DF62
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002528 Genomic DNA. Translation: AEE18988.1.
RefSeqiWP_013750496.1. NC_015496.1.
YP_004430256.1. NC_015496.1.

Genome annotation databases

EnsemblBacteriaiAEE18988; AEE18988; Krodi_1004.
GeneIDi10568043.
KEGGikdi:Krodi_1004.
PATRICi54569107. VBIKroSp190710_1040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002528 Genomic DNA. Translation: AEE18988.1 .
RefSeqi WP_013750496.1. NC_015496.1.
YP_004430256.1. NC_015496.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEE18988 ; AEE18988 ; Krodi_1004 .
GeneIDi 10568043.
KEGGi kdi:Krodi_1004.
PATRICi 54569107. VBIKroSp190710_1040.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci KSP983548:GHAF-1019-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    , Abe F., Horikoshi K., Keller M., Antranikian G.
    J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7-5Imported.
  2. "Complete sequence of Krokinobacter diaphorus 4H-3-7-5."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7-5.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 4H-3-7-5.

Entry informationi

Entry nameiF4AVH1_DOKS4
AccessioniPrimary (citable) accession number: F4AVH1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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