Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F4AVH1

- F4AVH1_DOKS4

UniProt

F4AVH1 - F4AVH1_DOKS4

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Krodi_1004

Organism
Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciKSP983548:GHAF-1019-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Krodi_1004Imported
    OrganismiDokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5))Imported
    Taxonomic identifieri983548 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeDokdonia
    ProteomesiUP000008290: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F4AVH1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLFAALIKT LDSTNKTNEK VKALAHYFRE ASDKDKVWTI AILSHRRPPR    50
    PVNTTLLREW ASELSNIPLW LFEESYHIVG DLAETIALVV PAATASSEKS 100
    LTQFLEEMIS LKRKTDEEKK EYLFDNWANL NYYERFVFTK LITGGFRIGV 150
    SQKLMTRALS QATDIEEDVL AYKLMGDWKP QTVTFHDLVI EEDASQEFSR 200
    PYPFYLAYAV EDEPSALGDV TDFLAEHKWD GIRSQTIFRN GEIFIWSRGE 250
    ELVTDKYPEL EILKEHIPDG TVIDGELLPF YDGQIGTFND LQARIGRKTV 300
    SKKMLKEVPV IIKAYDILEW EGKDLRETAF AKRRTILESL YRNITDKELP 350
    IGISETMEFD SWEAMAQERD RSREMRSEGL MIKRKDSPYR VGRKKGDWWK 400
    WKVDPLTIDA VLTYAMRGHG RRSNLFTDYT FGLWNEDKTE LVTFAKAYSG 450
    LTDAEFRKVD NWIKKNTLER FGPVRSVTPH HVFEIAFEGI ALSKRHKSGI 500
    ATRFPRMLRW RHDKQIEDAN TLEDLKGMIP SAAKESLPPT K 541
    Length:541
    Mass (Da):62,734
    Last modified:June 28, 2011 - v1
    Checksum:iEDEA97A40524DF62
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002528 Genomic DNA. Translation: AEE18988.1.
    RefSeqiWP_013750496.1. NC_015496.1.
    YP_004430256.1. NC_015496.1.

    Genome annotation databases

    EnsemblBacteriaiAEE18988; AEE18988; Krodi_1004.
    GeneIDi10568043.
    KEGGikdi:Krodi_1004.
    PATRICi54569107. VBIKroSp190710_1040.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002528 Genomic DNA. Translation: AEE18988.1 .
    RefSeqi WP_013750496.1. NC_015496.1.
    YP_004430256.1. NC_015496.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEE18988 ; AEE18988 ; Krodi_1004 .
    GeneIDi 10568043.
    KEGGi kdi:Krodi_1004.
    PATRICi 54569107. VBIKroSp190710_1040.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci KSP983548:GHAF-1019-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
      Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
      , Abe F., Horikoshi K., Keller M., Antranikian G.
      J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 4H-3-7-5Imported.
    2. "Complete sequence of Krokinobacter diaphorus 4H-3-7-5."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 4H-3-7-5Imported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 4H-3-7-5.

    Entry informationi

    Entry nameiF4AVH1_DOKS4
    AccessioniPrimary (citable) accession number: F4AVH1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3