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F4AVH1 (F4AVH1_KROS4) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length541 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEE18988.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F4AVH1 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: EDEA97A40524DF62

FASTA54162,734
        10         20         30         40         50         60 
MKLFAALIKT LDSTNKTNEK VKALAHYFRE ASDKDKVWTI AILSHRRPPR PVNTTLLREW 

        70         80         90        100        110        120 
ASELSNIPLW LFEESYHIVG DLAETIALVV PAATASSEKS LTQFLEEMIS LKRKTDEEKK 

       130        140        150        160        170        180 
EYLFDNWANL NYYERFVFTK LITGGFRIGV SQKLMTRALS QATDIEEDVL AYKLMGDWKP 

       190        200        210        220        230        240 
QTVTFHDLVI EEDASQEFSR PYPFYLAYAV EDEPSALGDV TDFLAEHKWD GIRSQTIFRN 

       250        260        270        280        290        300 
GEIFIWSRGE ELVTDKYPEL EILKEHIPDG TVIDGELLPF YDGQIGTFND LQARIGRKTV 

       310        320        330        340        350        360 
SKKMLKEVPV IIKAYDILEW EGKDLRETAF AKRRTILESL YRNITDKELP IGISETMEFD 

       370        380        390        400        410        420 
SWEAMAQERD RSREMRSEGL MIKRKDSPYR VGRKKGDWWK WKVDPLTIDA VLTYAMRGHG 

       430        440        450        460        470        480 
RRSNLFTDYT FGLWNEDKTE LVTFAKAYSG LTDAEFRKVD NWIKKNTLER FGPVRSVTPH 

       490        500        510        520        530        540 
HVFEIAFEGI ALSKRHKSGI ATRFPRMLRW RHDKQIEDAN TLEDLKGMIP SAAKESLPPT 


K 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Krokinobacter diaphorus 4H-3-7-5."
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 4H-3-7-5.
[2]"Complete sequence of Krokinobacter sp. 4H-3-7-5."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 4H-3-7-5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002528 Genomic DNA. Translation: AEE18988.1.
RefSeqYP_004430256.1. NC_015496.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEE18988; AEE18988; Krodi_1004.
GeneID10568043.
KEGGkdi:Krodi_1004.
PATRIC54569107. VBIKroSp190710_1040.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycKSP983548:GHAF-1019-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4AVH1_KROS4
AccessionPrimary (citable) accession number: F4AVH1
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)