F4AVH1 (F4AVH1_KROS4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEE18988.1

Gene names

Ordered Locus Names:

Krodi_1004

Organism

Krokinobacter sp. (strain 4H-3-7-5) (Krokinobacter diaphorus (strain 4H-3-7-5)) [Complete proteome] [HAMAP] EMBL AEE18988.1

Taxonomic identifier

983548 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Krokinobacter

Protein attributes

Sequence length	541 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEE18988.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4AVH1 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: EDEA97A40524DF62	FASTA	541	62,734
	10 20 30 40 50 60 MKLFAALIKT LDSTNKTNEK VKALAHYFRE ASDKDKVWTI AILSHRRPPR PVNTTLLREW 70 80 90 100 110 120 ASELSNIPLW LFEESYHIVG DLAETIALVV PAATASSEKS LTQFLEEMIS LKRKTDEEKK 130 140 150 160 170 180 EYLFDNWANL NYYERFVFTK LITGGFRIGV SQKLMTRALS QATDIEEDVL AYKLMGDWKP 190 200 210 220 230 240 QTVTFHDLVI EEDASQEFSR PYPFYLAYAV EDEPSALGDV TDFLAEHKWD GIRSQTIFRN 250 260 270 280 290 300 GEIFIWSRGE ELVTDKYPEL EILKEHIPDG TVIDGELLPF YDGQIGTFND LQARIGRKTV 310 320 330 340 350 360 SKKMLKEVPV IIKAYDILEW EGKDLRETAF AKRRTILESL YRNITDKELP IGISETMEFD 370 380 390 400 410 420 SWEAMAQERD RSREMRSEGL MIKRKDSPYR VGRKKGDWWK WKVDPLTIDA VLTYAMRGHG 430 440 450 460 470 480 RRSNLFTDYT FGLWNEDKTE LVTFAKAYSG LTDAEFRKVD NWIKKNTLER FGPVRSVTPH 490 500 510 520 530 540 HVFEIAFEGI ALSKRHKSGI ATRFPRMLRW RHDKQIEDAN TLEDLKGMIP SAAKESLPPT K

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of Krokinobacter diaphorus 4H-3-7-5." Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 4H-3-7-5.
[2]	"Complete sequence of Krokinobacter sp. 4H-3-7-5." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 4H-3-7-5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002528 Genomic DNA. Translation: AEE18988.1.
RefSeq	YP_004430256.1. NC_015496.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEE18988; AEE18988; Krodi_1004.
GeneID	10568043.
KEGG	kdi:Krodi_1004.
PATRIC	54569107. VBIKroSp190710_1040.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	KSP983548:GHAF-1018-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F4AVH1_KROS4

Accession

Primary (citable) accession number: F4AVH1

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)