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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Glaag_3920

Organism
Glaciecola sp. (strain 4H-3-7+YE-5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciGSP983545:GH3Q-3998-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Glaag_3920Imported
OrganismiGlaciecola sp. (strain 4H-3-7+YE-5)Imported
Taxonomic identifieri983545 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola
ProteomesiUP000006544: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

F4AKS5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAVAEVSLEH LFRVFTMPEG KDSKLAQIEQ HLSDNLADFL SQHVVTKVTS
60 70 80 90 100
LEQIEQSFAE FNVPEHPEFV SEHAANLLEK LVANSVNTYS PTFIGHMTSA
110 120 130 140 150
LPYFHLSLAK LLVGLNQNLV KIETSKAFTP LERQVLGMMH ELVYAQDSEF
160 170 180 190 200
YNTYLHSANH ALGAFCSGGT IANVTALWVA RNKALAADGV FKGVAREGLA
210 220 230 240 250
AGLDHYGYKK MAILSSRRGH YSLSKSVDLL GLGREQLITL DCPTQRLSPE
260 270 280 290 300
KALAFGKQYA EQGNKILSIV GVAGTTETGH VDPLDELADV AQELGCHFHV
310 320 330 340 350
DAAWGGATLF SSTHRNILKG IQRADSVTID AHKQMYVPMG AGMVLFKDPN
360 370 380 390 400
DSNAVRHHAN YILRAGSKDL GATTLEGSRN GMAMMVYASL HIFGRQGYEL
410 420 430 440 450
LIDQSIDKAK IFARMIQSHP DFELITPPTL SLLTYRVNPQ EVQQQVKADP
460 470 480 490 500
SLSPHFNEKL DKLTVYVQKQ QREAGKSFVS RTRLQTQTYG EQTMTVFRVV
510 520 530
LANPLTTEKD LQNILDEQVA IASKSQNWAE LTNTE
Length:535
Mass (Da):59,125
Last modified:June 28, 2011 - v1
Checksum:i47B0FC5FC7011D0B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002526 Genomic DNA. Translation: AEE24846.1.
RefSeqiWP_013754856.1. NC_015497.1.
YP_004436114.1. NC_015497.1.

Genome annotation databases

EnsemblBacteriaiAEE24846; AEE24846; Glaag_3920.
GeneIDi10574088.
KEGGigag:Glaag_3920.
PATRICi54581766. VBIGlaSp182133_4144.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002526 Genomic DNA. Translation: AEE24846.1.
RefSeqiWP_013754856.1. NC_015497.1.
YP_004436114.1. NC_015497.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEE24846; AEE24846; Glaag_3920.
GeneIDi10574088.
KEGGigag:Glaag_3920.
PATRICi54581766. VBIGlaSp182133_4144.

Phylogenomic databases

KOiK01580.

Enzyme and pathway databases

BioCyciGSP983545:GH3Q-3998-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7+YE-5Imported.
  2. "Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 4H-3-7+YE-5.

Entry informationi

Entry nameiF4AKS5_GLAS4
AccessioniPrimary (citable) accession number: F4AKS5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: January 7, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.