F4AKS5 (F4AKS5_GLAS4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pyridoxal-dependent decarboxylase EMBL AEE24846.1

Gene names

Ordered Locus Names:

Glaag_3920 EMBL AEE24846.1

Organism

Glaciecola sp. (strain 4H-3-7+YE-5) [Complete proteome] [HAMAP] EMBL AEE24846.1

Taxonomic identifier

983545 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Glaciecola

Protein attributes

Sequence length	535 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F4AKS5 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 47B0FC5FC7011D0B	FASTA	535	59,125
	10 20 30 40 50 60 MAVAEVSLEH LFRVFTMPEG KDSKLAQIEQ HLSDNLADFL SQHVVTKVTS LEQIEQSFAE 70 80 90 100 110 120 FNVPEHPEFV SEHAANLLEK LVANSVNTYS PTFIGHMTSA LPYFHLSLAK LLVGLNQNLV 130 140 150 160 170 180 KIETSKAFTP LERQVLGMMH ELVYAQDSEF YNTYLHSANH ALGAFCSGGT IANVTALWVA 190 200 210 220 230 240 RNKALAADGV FKGVAREGLA AGLDHYGYKK MAILSSRRGH YSLSKSVDLL GLGREQLITL 250 260 270 280 290 300 DCPTQRLSPE KALAFGKQYA EQGNKILSIV GVAGTTETGH VDPLDELADV AQELGCHFHV 310 320 330 340 350 360 DAAWGGATLF SSTHRNILKG IQRADSVTID AHKQMYVPMG AGMVLFKDPN DSNAVRHHAN 370 380 390 400 410 420 YILRAGSKDL GATTLEGSRN GMAMMVYASL HIFGRQGYEL LIDQSIDKAK IFARMIQSHP 430 440 450 460 470 480 DFELITPPTL SLLTYRVNPQ EVQQQVKADP SLSPHFNEKL DKLTVYVQKQ QREAGKSFVS 490 500 510 520 530 RTRLQTQTYG EQTMTVFRVV LANPLTTEKD LQNILDEQVA IASKSQNWAE LTNTE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5." US DOE Joint Genome Institute Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Land M.L., Mikhailova N., Nolan M., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A., Abe F. , Horikoshi K., Keller M., Antranikian G. J. Bacteriol. 193:4547-4548(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 4H-3-7+YE-5 EMBL AEE24846.1.
[2]	"Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 4H-3-7+YE-5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002526 Genomic DNA. Translation: AEE24846.1.
RefSeq	YP_004436114.1. NC_015497.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEE24846; AEE24846; Glaag_3920.
GeneID	10574088.
KEGG	gag:Glaag_3920.
PATRIC	54581766. VBIGlaSp182133_4144.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01580.
Enzyme and pathway databases
BioCyc	GSP983545:GH3Q-4329-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F4AKS5_GLAS4

Accession

Primary (citable) accession number: F4AKS5

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)