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F4AK89 (F4AK89_GLAS4) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alpha-amylase RuleBase RU361134

EC=3.2.1.1 RuleBase RU361134
Gene names
Ordered Locus Names:Glaag_0458 EMBL AEE21421.1
OrganismGlaciecola sp. (strain 4H-3-7+YE-5) [Complete proteome] [HAMAP] EMBL AEE21421.1
Taxonomic identifier983545 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola

Protein attributes

Sequence length584 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Biological processCarbohydrate metabolism RuleBase RU361134
   Molecular functionGlycosidase RuleBase RU361134
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F4AK89 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 3CBBC80A33EFDB52

FASTA58466,274
        10         20         30         40         50         60 
MFTHYHKAQS AYQLAYRCVL IMFMLNSAST LASPAPQSNS VDPFWQNATV YFMMTDRFAN 

        70         80         90        100        110        120 
GDKSNDKQFA RKPDGATLRN FMGGDIKGVT QKIKSGYFTE LGVDVLWLTP LNEQIHGRWD 

       130        140        150        160        170        180 
DEWGRSYPFH GYWIKDWTAI DPNFGTEQDM AEMIATAHAH GIKVLADVII NHTGPKTSKD 

       190        200        210        220        230        240 
VAWPDEWVRT KPYCSWDSYQ GNVECALASS LTDIRTESEA PVTLPPFLIE KWRSEGRLEQ 

       250        260        270        280        290        300 
ELAELNAFFE RTELPRAPKY YITKWITDWV REYGIDGFRV DTAKHVEADV WKIVKAEGTT 

       310        320        330        340        350        360 
ALAQWKAEHP EQASDNKPFF MVGEVMHFGV DGFKNTPKGT RLYDYGDKQV DFFANGFDSL 

       370        380        390        400        410        420 
INMGFAAHAE QDMEQIFSTY SHELNQGALQ GVSVLNYVVS HDDPEPFDPK REHPYQAALK 

       430        440        450        460        470        480 
LMLAPGSAQI YYGDELARNL TYPDAVGDAT WRSFMNWQDL APADNNAEQL TPKQQYTQQL 

       490        500        510        520        530        540 
LKHWQKLGQF RHAHLSVGAG VHKMLQEKPY VFQRTLGATK QNAADQVLVA IGMPKGSKVI 

       550        560        570        580 
ELHKLFEEGA ELKEYYSGTT VTVNDNQVIL DTPFDIVLLG ALEQ 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the marine, cellulose and xylan degrading bacterium Glaciecola sp. 4H-3-7+YE-5."
US DOE Joint Genome Institute
Klippel B., Lochner A., Bruce D.C., Davenport K.W., Detter C., Goodwin L.A., Han J., Han S., Land M.L., Mikhailova N., Nolan M., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A., Abe F. expand/collapse author list , Horikoshi K., Keller M., Antranikian G.
J. Bacteriol. 193:4547-4548(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 4H-3-7+YE-5 EMBL AEE21421.1.
[2]"Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 4H-3-7+YE-5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002526 Genomic DNA. Translation: AEE21421.1.
RefSeqYP_004432689.1. NC_015497.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEE21421; AEE21421; Glaag_0458.
GeneID10570566.
KEGGgag:Glaag_0458.
PATRIC54574285. VBIGlaSp182133_0478.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Enzyme and pathway databases

BioCycGSP983545:GH3Q-475-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 2 hits.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
ProtoNetSearch...

Entry information

Entry nameF4AK89_GLAS4
AccessionPrimary (citable) accession number: F4AK89
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: July 9, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)