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Protein

Alpha-amylase

Gene

Glaag_0458

Organism
Glaciecola sp. (strain 4H-3-7+YE-5)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciGSP983545:GH3Q-475-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Glaag_0458Imported
OrganismiGlaciecola sp. (strain 4H-3-7+YE-5)Imported
Taxonomic identifieri983545 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola
ProteomesiUP000006544 Componenti: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

F4AK89-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFTHYHKAQS AYQLAYRCVL IMFMLNSAST LASPAPQSNS VDPFWQNATV
60 70 80 90 100
YFMMTDRFAN GDKSNDKQFA RKPDGATLRN FMGGDIKGVT QKIKSGYFTE
110 120 130 140 150
LGVDVLWLTP LNEQIHGRWD DEWGRSYPFH GYWIKDWTAI DPNFGTEQDM
160 170 180 190 200
AEMIATAHAH GIKVLADVII NHTGPKTSKD VAWPDEWVRT KPYCSWDSYQ
210 220 230 240 250
GNVECALASS LTDIRTESEA PVTLPPFLIE KWRSEGRLEQ ELAELNAFFE
260 270 280 290 300
RTELPRAPKY YITKWITDWV REYGIDGFRV DTAKHVEADV WKIVKAEGTT
310 320 330 340 350
ALAQWKAEHP EQASDNKPFF MVGEVMHFGV DGFKNTPKGT RLYDYGDKQV
360 370 380 390 400
DFFANGFDSL INMGFAAHAE QDMEQIFSTY SHELNQGALQ GVSVLNYVVS
410 420 430 440 450
HDDPEPFDPK REHPYQAALK LMLAPGSAQI YYGDELARNL TYPDAVGDAT
460 470 480 490 500
WRSFMNWQDL APADNNAEQL TPKQQYTQQL LKHWQKLGQF RHAHLSVGAG
510 520 530 540 550
VHKMLQEKPY VFQRTLGATK QNAADQVLVA IGMPKGSKVI ELHKLFEEGA
560 570 580
ELKEYYSGTT VTVNDNQVIL DTPFDIVLLG ALEQ
Length:584
Mass (Da):66,274
Last modified:June 28, 2011 - v1
Checksum:i3CBBC80A33EFDB52
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002526 Genomic DNA. Translation: AEE21421.1.
RefSeqiWP_013752750.1. NC_015497.1.
YP_004432689.1. NC_015497.1.

Genome annotation databases

EnsemblBacteriaiAEE21421; AEE21421; Glaag_0458.
KEGGigag:Glaag_0458.
PATRICi54574285. VBIGlaSp182133_0478.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002526 Genomic DNA. Translation: AEE21421.1.
RefSeqiWP_013752750.1. NC_015497.1.
YP_004432689.1. NC_015497.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEE21421; AEE21421; Glaag_0458.
KEGGigag:Glaag_0458.
PATRICi54574285. VBIGlaSp182133_0478.

Phylogenomic databases

KOiK01176.

Enzyme and pathway databases

BioCyciGSP983545:GH3Q-475-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7+YE-5Imported.
  2. "Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 4H-3-7+YE-5.

Entry informationi

Entry nameiF4AK89_GLAS4
AccessioniPrimary (citable) accession number: F4AK89
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 1, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.