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Protein
Submitted name:

DNA ligase (ATP)

Gene

Glaag_0078

Organism
Glaciecola sp. (strain 4H-3-7+YE-5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGSP983545:GH3Q-83-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Glaag_0078Imported
OrganismiGlaciecola sp. (strain 4H-3-7+YE-5)Imported
Taxonomic identifieri983545 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola
ProteomesiUP000006544 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525 PotentialImportedAdd
BLAST
Chaini26 – 283258 PotentialImportedPRO_5000736917Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi983545.Glaag_0078.

Structurei

3D structure databases

ProteinModelPortaliF4AHB8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F4AHB8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIYTRLYTC LVLIYLICIP LSHAFAQHKP EIELANRFND SVNVAEYLVS
60 70 80 90 100
EKLDGIRARW DGTQLLTRSG NPISAPIWFV ERLPKHVLDG ELWIGRQRFE
110 120 130 140 150
RTASVVLSHE PSDGWREIKF MLFDLPGYTG PFSERLRMLE VLAMQANLGH
160 170 180 190 200
MQVIPQRKYS NHSALMAALD EVSRGGGEGL MLHHQDALYT PLRSNNVLKL
210 220 230 240 250
KKHRDAEAIV LAHLPGNGKY QGMMGAIRVQ MSNGKVFKIG SGFSDQERRS
260 270 280
PPPVGSVVTF KYYDLTVNGI PKFASYIRRK PRQ
Length:283
Mass (Da):32,106
Last modified:June 28, 2011 - v1
Checksum:iC7069B03F8622700
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002526 Genomic DNA. Translation: AEE21047.1.
RefSeqiWP_013752513.1. NC_015497.1.
YP_004432315.1. NC_015497.1.

Genome annotation databases

EnsemblBacteriaiAEE21047; AEE21047; Glaag_0078.
KEGGigag:Glaag_0078.
PATRICi54573472. VBIGlaSp182133_0083.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002526 Genomic DNA. Translation: AEE21047.1.
RefSeqiWP_013752513.1. NC_015497.1.
YP_004432315.1. NC_015497.1.

3D structure databases

ProteinModelPortaliF4AHB8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi983545.Glaag_0078.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEE21047; AEE21047; Glaag_0078.
KEGGigag:Glaag_0078.
PATRICi54573472. VBIGlaSp182133_0083.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciGSP983545:GH3Q-83-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7+YE-5Imported.
  2. "Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 4H-3-7+YE-5.

Entry informationi

Entry nameiF4AHB8_GLAS4
AccessioniPrimary (citable) accession number: F4AHB8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 24, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.