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F4AHB8 (F4AHB8_GLAS4) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AEE21047.1
Gene names
Ordered Locus Names:Glaag_0078 EMBL AEE21047.1
OrganismGlaciecola sp. (strain 4H-3-7+YE-5) [Complete proteome] [HAMAP] EMBL AEE21047.1
Taxonomic identifier983545 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola

Protein attributes

Sequence length283 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL AEE21047.1
   Molecular functionLigase EMBL AEE21047.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL AEE21047.1
Chain26 – 283258 Potential EMBL AEE21047.1
PRO_5000736917

Sequences

Sequence LengthMass (Da)Tools
F4AHB8 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: C7069B03F8622700

FASTA28332,106
        10         20         30         40         50         60 
MSIYTRLYTC LVLIYLICIP LSHAFAQHKP EIELANRFND SVNVAEYLVS EKLDGIRARW 

        70         80         90        100        110        120 
DGTQLLTRSG NPISAPIWFV ERLPKHVLDG ELWIGRQRFE RTASVVLSHE PSDGWREIKF 

       130        140        150        160        170        180 
MLFDLPGYTG PFSERLRMLE VLAMQANLGH MQVIPQRKYS NHSALMAALD EVSRGGGEGL 

       190        200        210        220        230        240 
MLHHQDALYT PLRSNNVLKL KKHRDAEAIV LAHLPGNGKY QGMMGAIRVQ MSNGKVFKIG 

       250        260        270        280 
SGFSDQERRS PPPVGSVVTF KYYDLTVNGI PKFASYIRRK PRQ 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the marine, cellulose and xylan degrading bacterium Glaciecola sp. 4H-3-7+YE-5."
US DOE Joint Genome Institute
Klippel B., Lochner A., Bruce D.C., Davenport K.W., Detter C., Goodwin L.A., Han J., Han S., Land M.L., Mikhailova N., Nolan M., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A., Abe F. expand/collapse author list , Horikoshi K., Keller M., Antranikian G.
J. Bacteriol. 193:4547-4548(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 4H-3-7+YE-5 EMBL AEE21047.1.
[2]"Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 4H-3-7+YE-5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002526 Genomic DNA. Translation: AEE21047.1.
RefSeqYP_004432315.1. NC_015497.1.

3D structure databases

ProteinModelPortalF4AHB8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEE21047; AEE21047; Glaag_0078.
GeneID10570174.
KEGGgag:Glaag_0078.
PATRIC54573472. VBIGlaSp182133_0083.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycGSP983545:GH3Q-83-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF4AHB8_GLAS4
AccessionPrimary (citable) accession number: F4AHB8
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 11, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)