F4AHB8 (F4AHB8_GLAS4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase (ATP) EMBL AEE21047.1
EC=6.5.1.1 EMBL AEE21047.1

Gene names

Ordered Locus Names:

Glaag_0078 EMBL AEE21047.1

Organism

Glaciecola sp. (strain 4H-3-7+YE-5) [Complete proteome] [HAMAP] EMBL AEE21047.1

Taxonomic identifier

983545 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Glaciecola

Protein attributes

Sequence length	283 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL AEE21047.1
Molecular function	Ligase EMBL AEE21047.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 25	25	Potential EMBL AEE21047.1
	Chain	26 – 283	258	Potential		PRO_5000736917

Sequences

	Sequence		Length	Mass (Da)
	F4AHB8 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: C7069B03F8622700	FASTA	283	32,106
	10 20 30 40 50 60 MSIYTRLYTC LVLIYLICIP LSHAFAQHKP EIELANRFND SVNVAEYLVS EKLDGIRARW 70 80 90 100 110 120 DGTQLLTRSG NPISAPIWFV ERLPKHVLDG ELWIGRQRFE RTASVVLSHE PSDGWREIKF 130 140 150 160 170 180 MLFDLPGYTG PFSERLRMLE VLAMQANLGH MQVIPQRKYS NHSALMAALD EVSRGGGEGL 190 200 210 220 230 240 MLHHQDALYT PLRSNNVLKL KKHRDAEAIV LAHLPGNGKY QGMMGAIRVQ MSNGKVFKIG 250 260 270 280 SGFSDQERRS PPPVGSVVTF KYYDLTVNGI PKFASYIRRK PRQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5." US DOE Joint Genome Institute Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Land M.L., Mikhailova N., Nolan M., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A., Abe F. , Horikoshi K., Keller M., Antranikian G. J. Bacteriol. 193:4547-4548(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 4H-3-7+YE-5 EMBL AEE21047.1.
[2]	"Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 4H-3-7+YE-5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002526 Genomic DNA. Translation: AEE21047.1.
RefSeq	YP_004432315.1. NC_015497.1.
3D structure databases
ProteinModelPortal	F4AHB8.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEE21047; AEE21047; Glaag_0078.
GeneID	10570174.
KEGG	gag:Glaag_0078.
PATRIC	54573472. VBIGlaSp182133_0083.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	GSP983545:GH3Q-415-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F4AHB8_GLAS4

Accession

Primary (citable) accession number: F4AHB8

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)