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F4AHB8

- F4AHB8_GLAS4

UniProt

F4AHB8 - F4AHB8_GLAS4

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Protein
Submitted name:

DNA ligase (ATP)

Gene
Glaag_0078
Organism
Glaciecola sp. (strain 4H-3-7+YE-5)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGSP983545:GH3Q-83-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Glaag_0078Imported
OrganismiGlaciecola sp. (strain 4H-3-7+YE-5)Imported
Taxonomic identifieri983545 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola
ProteomesiUP000006544: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525 PredictedImportedAdd
BLAST
Chaini26 – 283258 PredictedImportedPRO_5000736917Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliF4AHB8.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F4AHB8-1 [UniParc]FASTAAdd to Basket

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MSIYTRLYTC LVLIYLICIP LSHAFAQHKP EIELANRFND SVNVAEYLVS    50
EKLDGIRARW DGTQLLTRSG NPISAPIWFV ERLPKHVLDG ELWIGRQRFE 100
RTASVVLSHE PSDGWREIKF MLFDLPGYTG PFSERLRMLE VLAMQANLGH 150
MQVIPQRKYS NHSALMAALD EVSRGGGEGL MLHHQDALYT PLRSNNVLKL 200
KKHRDAEAIV LAHLPGNGKY QGMMGAIRVQ MSNGKVFKIG SGFSDQERRS 250
PPPVGSVVTF KYYDLTVNGI PKFASYIRRK PRQ 283
Length:283
Mass (Da):32,106
Last modified:June 28, 2011 - v1
Checksum:iC7069B03F8622700
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002526 Genomic DNA. Translation: AEE21047.1.
RefSeqiWP_013752513.1. NC_015497.1.
YP_004432315.1. NC_015497.1.

Genome annotation databases

EnsemblBacteriaiAEE21047; AEE21047; Glaag_0078.
GeneIDi10570174.
KEGGigag:Glaag_0078.
PATRICi54573472. VBIGlaSp182133_0083.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002526 Genomic DNA. Translation: AEE21047.1 .
RefSeqi WP_013752513.1. NC_015497.1.
YP_004432315.1. NC_015497.1.

3D structure databases

ProteinModelPortali F4AHB8.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEE21047 ; AEE21047 ; Glaag_0078 .
GeneIDi 10570174.
KEGGi gag:Glaag_0078.
PATRICi 54573472. VBIGlaSp182133_0083.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci GSP983545:GH3Q-83-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 4H-3-7+YE-5Imported.
  2. "Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 4H-3-7+YE-5.

Entry informationi

Entry nameiF4AHB8_GLAS4
AccessioniPrimary (citable) accession number: F4AHB8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 3, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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