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F4AHB8

- F4AHB8_GLAS4

UniProt

F4AHB8 - F4AHB8_GLAS4

Protein
Submitted name:

DNA ligase (ATP)

Gene

Glaag_0078

Organism
Glaciecola sp. (strain 4H-3-7+YE-5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciGSP983545:GH3Q-83-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Glaag_0078Imported
    OrganismiGlaciecola sp. (strain 4H-3-7+YE-5)Imported
    Taxonomic identifieri983545 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola
    ProteomesiUP000006544: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525 PotentialImportedAdd
    BLAST
    Chaini26 – 283258 PotentialImportedPRO_5000736917Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliF4AHB8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    F4AHB8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSIYTRLYTC LVLIYLICIP LSHAFAQHKP EIELANRFND SVNVAEYLVS    50
    EKLDGIRARW DGTQLLTRSG NPISAPIWFV ERLPKHVLDG ELWIGRQRFE 100
    RTASVVLSHE PSDGWREIKF MLFDLPGYTG PFSERLRMLE VLAMQANLGH 150
    MQVIPQRKYS NHSALMAALD EVSRGGGEGL MLHHQDALYT PLRSNNVLKL 200
    KKHRDAEAIV LAHLPGNGKY QGMMGAIRVQ MSNGKVFKIG SGFSDQERRS 250
    PPPVGSVVTF KYYDLTVNGI PKFASYIRRK PRQ 283
    Length:283
    Mass (Da):32,106
    Last modified:June 28, 2011 - v1
    Checksum:iC7069B03F8622700
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002526 Genomic DNA. Translation: AEE21047.1.
    RefSeqiWP_013752513.1. NC_015497.1.
    YP_004432315.1. NC_015497.1.

    Genome annotation databases

    EnsemblBacteriaiAEE21047; AEE21047; Glaag_0078.
    GeneIDi10570174.
    KEGGigag:Glaag_0078.
    PATRICi54573472. VBIGlaSp182133_0083.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002526 Genomic DNA. Translation: AEE21047.1 .
    RefSeqi WP_013752513.1. NC_015497.1.
    YP_004432315.1. NC_015497.1.

    3D structure databases

    ProteinModelPortali F4AHB8.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEE21047 ; AEE21047 ; Glaag_0078 .
    GeneIDi 10570174.
    KEGGi gag:Glaag_0078.
    PATRICi 54573472. VBIGlaSp182133_0083.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci GSP983545:GH3Q-83-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 4H-3-7+YE-5Imported.
    2. "Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Piela B., Lochner A., Antranikian F.I., Woyke T.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 4H-3-7+YE-5.

    Entry informationi

    Entry nameiF4AHB8_GLAS4
    AccessioniPrimary (citable) accession number: F4AHB8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3