F3Z229 (F3Z229_DESAF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

ORF Names:

Desaf_2930 EMBL EGJ51238.1

Organism

Desulfovibrio africanus str. Walvis Bay EMBL EGJ51238.1

Taxonomic identifier

690850 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio › Desulfovibrio africanus

Protein attributes

Sequence length	379 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F3Z229 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 34E28CAD3D35DD66	FASTA	379	41,014
	10 20 30 40 50 60 MAITYNMLEV QVDLKRIVDN YRFMRSRAAR LMPVIKADAY GHGLLPVAKA LAAAGADAFC 70 80 90 100 110 120 VGSVGEAVTL RRERKPDSGC RVVSLLGPMD REDYAEAVSH EVTLLVGRHE QLELLQVAAS 130 140 150 160 170 180 SAGRMAPVAL KFDTGMSRLG FSEADVPRLI QTLTTSPNLR LELVTSHLAT ADEDSGVDYV 190 200 210 220 230 240 LAQAERFRAI TAKLSAAGLR FQANLANSAG ILAYPELHFD LQRPGIALYG SNPFLGTNHE 250 260 270 280 290 300 ELGRPLKQAM SVTTRILDVH DLPRGGTISY GRTYTAPRDM RVAIMAAGYA DGYSRGLSNK 310 320 330 340 350 360 GQVCLKGSRA PILGRVCMQL TAVDITGRED VHPGDTVHLL GGSGRGYISV EELAGWWGTI 370 SYESFCILGL NRRVYFGGD

References

[1]

"Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay." Brown S.D., Wall J.D., Kucken A.M., Gilmour C.C., Podar M., Brandt C.C., Teshima H., Detter J.C., Han C.S., Land M.L., Lucas S., Han J., Pennacchio L., Nolan M., Pitluck S., Woyke T., Goodwin L., Palumbo A.V., Elias D.A. J. Bacteriol. 193:4037-4038(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Walvis Bay EMBL EGJ51238.1.

[2]

"Closure of Desulfovibrio africanus str. Walvis Bay." Hurt R.A.Jr., Elias D.A., Land M.L., Brown S.D. Submitted (FEB-2013) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Walvis Bay EMBL EGJ51238.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003221 Genomic DNA. Translation: EGJ51238.1.
RefSeq	YP_005052897.1. NC_016629.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EGJ51238; EGJ51238; Desaf_2930.
GeneID	11566640.
KEGG	daf:Desaf_2930.
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F3Z229_DESAF

Accession

Primary (citable) accession number: F3Z229

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)