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Protein
Submitted name:

DNA ligase D

Gene

Desaf_0308

Organism
Desulfovibrio africanus str. Walvis Bay
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDAFR690850:GHYW-316-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:Desaf_0308Imported
OrganismiDesulfovibrio africanus str. Walvis BayImported
Taxonomic identifieri690850 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000007844 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi690850.Desaf_0308.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F3YU59-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARLSEYWRK RDFSRTPEPS GRGPELESGR GFVIHKHKAR RLHYDLRLEL
60 70 80 90 100
DGVLLSWAVP RGPSLDPGQK RLAVRVEDHP VEYGSFEGVI PQGEYGGGTV
110 120 130 140 150
MLWDRGVWEP EGDPHEGLRQ GKLHFRLRGE KLSGGWILAH MSGKRAKEND
160 170 180 190 200
WLLIKVRDEQ ANQRLDIETD RPESAVTGRT LAQIASSADR VWSGAGEHAS
210 220 230 240 250
GTDSRRDVRD RERTGAEAEG VTIGTLDGDV RARIAGNVGP APPAAVEYAD
260 270 280 290 300
TQPLPPPAQG QARPETLTIK NKTAESPRSP GLPDFAAMPG ARPGPMPEQI
310 320 330 340 350
RPQLATLVDS PPAGEQWLHE IKFDGYRLLL IIDNSKARLM TRGGQDWTHR
360 370 380 390 400
FPELARAAGG LTLRRAVLDG EAVVLDERGR PDFQALQNVL KGLSGGTLAM
410 420 430 440 450
YLFDMPYAEG QDLSGCALIE RKEALRSVLG AIGQTPSPLR FSDHIVGKGK
460 470 480 490 500
LVLENACQMG LEGIVSKRAD AHYEPRRAPT WLKSKCGHRQ EVVVAGWTDP
510 520 530 540 550
KGQRTGFGAL LVGVHDRQGR LIYAGKVGTG YDTQVLGDLS GRLAGLATDD
560 570 580 590 600
AAFADTHRVG SLADVHWVRP ELVAEVDFAG WTRDGIMRHP SFKGLREDKP
610 620 630 640 650
PNEVVRENPM EPKARESMRK QHVPAKTGRA KGAIKLTHPR KVLVPYTGLT
660 670 680 690 700
KIGLADYYRE VAGFMLPHVV GRPLSLVRCP GGLGEGCFFQ RHPAGGVPHG
710 720 730 740 750
VQGVRVLEKG HERTWLSVSD LDGLLALVQL GVLEIHCWGA RNEDLERPDR
760 770 780 790 800
LVFDLDPGED VEPARVTAAV LELREFLEGL GLTGFAKATG GKGFHIVLPL
810 820 830 840 850
QRKPGWQELR EFARAVAEEL AVRKPGGFVS VAGKARRSGR IYIDWLRNAR
860 870 880 890 900
GASSIAPYST RARPGAPVAV PLTWEELTAG FAPNSFDVQA VRSRVASLRA
910 920 930
DPWEGFFSLR QGLSASMWRA LGRKRPAGSL I
Length:931
Mass (Da):101,977
Last modified:June 28, 2011 - v1
Checksum:iA5A826C20A1691CC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003221 Genomic DNA. Translation: EGJ48665.1.
RefSeqiWP_014258520.1. NC_016629.1.
YP_005050324.1. NC_016629.1.

Genome annotation databases

EnsemblBacteriaiEGJ48665; EGJ48665; Desaf_0308.
KEGGidaf:Desaf_0308.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003221 Genomic DNA. Translation: EGJ48665.1.
RefSeqiWP_014258520.1. NC_016629.1.
YP_005050324.1. NC_016629.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi690850.Desaf_0308.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEGJ48665; EGJ48665; Desaf_0308.
KEGGidaf:Desaf_0308.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciDAFR690850:GHYW-316-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Walvis BayImported.

Entry informationi

Entry nameiF3YU59_DESAF
AccessioniPrimary (citable) accession number: F3YU59
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 24, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.