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F3YU59

- F3YU59_DESAF

UniProt

F3YU59 - F3YU59_DESAF

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Protein
Submitted name:

DNA ligase D

Gene
Desaf_0308
Organism
Desulfovibrio africanus str. Walvis Bay
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDAFR690850:GHYW-316-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:Desaf_0308Imported
OrganismiDesulfovibrio africanus str. Walvis BayImported
Taxonomic identifieri690850 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000007844: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F3YU59-1 [UniParc]FASTAAdd to Basket

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MARLSEYWRK RDFSRTPEPS GRGPELESGR GFVIHKHKAR RLHYDLRLEL    50
DGVLLSWAVP RGPSLDPGQK RLAVRVEDHP VEYGSFEGVI PQGEYGGGTV 100
MLWDRGVWEP EGDPHEGLRQ GKLHFRLRGE KLSGGWILAH MSGKRAKEND 150
WLLIKVRDEQ ANQRLDIETD RPESAVTGRT LAQIASSADR VWSGAGEHAS 200
GTDSRRDVRD RERTGAEAEG VTIGTLDGDV RARIAGNVGP APPAAVEYAD 250
TQPLPPPAQG QARPETLTIK NKTAESPRSP GLPDFAAMPG ARPGPMPEQI 300
RPQLATLVDS PPAGEQWLHE IKFDGYRLLL IIDNSKARLM TRGGQDWTHR 350
FPELARAAGG LTLRRAVLDG EAVVLDERGR PDFQALQNVL KGLSGGTLAM 400
YLFDMPYAEG QDLSGCALIE RKEALRSVLG AIGQTPSPLR FSDHIVGKGK 450
LVLENACQMG LEGIVSKRAD AHYEPRRAPT WLKSKCGHRQ EVVVAGWTDP 500
KGQRTGFGAL LVGVHDRQGR LIYAGKVGTG YDTQVLGDLS GRLAGLATDD 550
AAFADTHRVG SLADVHWVRP ELVAEVDFAG WTRDGIMRHP SFKGLREDKP 600
PNEVVRENPM EPKARESMRK QHVPAKTGRA KGAIKLTHPR KVLVPYTGLT 650
KIGLADYYRE VAGFMLPHVV GRPLSLVRCP GGLGEGCFFQ RHPAGGVPHG 700
VQGVRVLEKG HERTWLSVSD LDGLLALVQL GVLEIHCWGA RNEDLERPDR 750
LVFDLDPGED VEPARVTAAV LELREFLEGL GLTGFAKATG GKGFHIVLPL 800
QRKPGWQELR EFARAVAEEL AVRKPGGFVS VAGKARRSGR IYIDWLRNAR 850
GASSIAPYST RARPGAPVAV PLTWEELTAG FAPNSFDVQA VRSRVASLRA 900
DPWEGFFSLR QGLSASMWRA LGRKRPAGSL I 931
Length:931
Mass (Da):101,977
Last modified:June 28, 2011 - v1
Checksum:iA5A826C20A1691CC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003221 Genomic DNA. Translation: EGJ48665.1.
RefSeqiYP_005050324.1. NC_016629.1.

Genome annotation databases

EnsemblBacteriaiEGJ48665; EGJ48665; Desaf_0308.
GeneIDi11567218.
KEGGidaf:Desaf_0308.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003221 Genomic DNA. Translation: EGJ48665.1 .
RefSeqi YP_005050324.1. NC_016629.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai EGJ48665 ; EGJ48665 ; Desaf_0308 .
GeneIDi 11567218.
KEGGi daf:Desaf_0308.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci DAFR690850:GHYW-316-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Walvis BayImported.

Entry informationi

Entry nameiF3YU59_DESAF
AccessioniPrimary (citable) accession number: F3YU59
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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