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F3YU59 (F3YU59_DESAF) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length931 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL EGJ48665.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F3YU59 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: A5A826C20A1691CC

FASTA931101,977
        10         20         30         40         50         60 
MARLSEYWRK RDFSRTPEPS GRGPELESGR GFVIHKHKAR RLHYDLRLEL DGVLLSWAVP 

        70         80         90        100        110        120 
RGPSLDPGQK RLAVRVEDHP VEYGSFEGVI PQGEYGGGTV MLWDRGVWEP EGDPHEGLRQ 

       130        140        150        160        170        180 
GKLHFRLRGE KLSGGWILAH MSGKRAKEND WLLIKVRDEQ ANQRLDIETD RPESAVTGRT 

       190        200        210        220        230        240 
LAQIASSADR VWSGAGEHAS GTDSRRDVRD RERTGAEAEG VTIGTLDGDV RARIAGNVGP 

       250        260        270        280        290        300 
APPAAVEYAD TQPLPPPAQG QARPETLTIK NKTAESPRSP GLPDFAAMPG ARPGPMPEQI 

       310        320        330        340        350        360 
RPQLATLVDS PPAGEQWLHE IKFDGYRLLL IIDNSKARLM TRGGQDWTHR FPELARAAGG 

       370        380        390        400        410        420 
LTLRRAVLDG EAVVLDERGR PDFQALQNVL KGLSGGTLAM YLFDMPYAEG QDLSGCALIE 

       430        440        450        460        470        480 
RKEALRSVLG AIGQTPSPLR FSDHIVGKGK LVLENACQMG LEGIVSKRAD AHYEPRRAPT 

       490        500        510        520        530        540 
WLKSKCGHRQ EVVVAGWTDP KGQRTGFGAL LVGVHDRQGR LIYAGKVGTG YDTQVLGDLS 

       550        560        570        580        590        600 
GRLAGLATDD AAFADTHRVG SLADVHWVRP ELVAEVDFAG WTRDGIMRHP SFKGLREDKP 

       610        620        630        640        650        660 
PNEVVRENPM EPKARESMRK QHVPAKTGRA KGAIKLTHPR KVLVPYTGLT KIGLADYYRE 

       670        680        690        700        710        720 
VAGFMLPHVV GRPLSLVRCP GGLGEGCFFQ RHPAGGVPHG VQGVRVLEKG HERTWLSVSD 

       730        740        750        760        770        780 
LDGLLALVQL GVLEIHCWGA RNEDLERPDR LVFDLDPGED VEPARVTAAV LELREFLEGL 

       790        800        810        820        830        840 
GLTGFAKATG GKGFHIVLPL QRKPGWQELR EFARAVAEEL AVRKPGGFVS VAGKARRSGR 

       850        860        870        880        890        900 
IYIDWLRNAR GASSIAPYST RARPGAPVAV PLTWEELTAG FAPNSFDVQA VRSRVASLRA 

       910        920        930 
DPWEGFFSLR QGLSASMWRA LGRKRPAGSL I 

« Hide

References

[1]"Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay."
Brown S.D., Wall J.D., Kucken A.M., Gilmour C.C., Podar M., Brandt C.C., Teshima H., Detter J.C., Han C.S., Land M.L., Lucas S., Han J., Pennacchio L., Nolan M., Pitluck S., Woyke T., Goodwin L., Palumbo A.V., Elias D.A.
J. Bacteriol. 193:4037-4038(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Walvis Bay EMBL EGJ48665.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003221 Genomic DNA. Translation: EGJ48665.1.
RefSeqYP_005050324.1. NC_016629.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEGJ48665; EGJ48665; Desaf_0308.
GeneID11567218.
KEGGdaf:Desaf_0308.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycDAFR690850:GHYW-316-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF3YU59_DESAF
AccessionPrimary (citable) accession number: F3YU59
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)