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F3YU59

- F3YU59_DESAF

UniProt

F3YU59 - F3YU59_DESAF

Protein
Submitted name:

DNA ligase D

Gene

Desaf_0308

Organism
Desulfovibrio africanus str. Walvis Bay
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (28 Jun 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciDAFR690850:GHYW-316-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    ORF Names:Desaf_0308Imported
    OrganismiDesulfovibrio africanus str. Walvis BayImported
    Taxonomic identifieri690850 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
    ProteomesiUP000007844: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F3YU59-1 [UniParc]FASTAAdd to Basket

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    MARLSEYWRK RDFSRTPEPS GRGPELESGR GFVIHKHKAR RLHYDLRLEL    50
    DGVLLSWAVP RGPSLDPGQK RLAVRVEDHP VEYGSFEGVI PQGEYGGGTV 100
    MLWDRGVWEP EGDPHEGLRQ GKLHFRLRGE KLSGGWILAH MSGKRAKEND 150
    WLLIKVRDEQ ANQRLDIETD RPESAVTGRT LAQIASSADR VWSGAGEHAS 200
    GTDSRRDVRD RERTGAEAEG VTIGTLDGDV RARIAGNVGP APPAAVEYAD 250
    TQPLPPPAQG QARPETLTIK NKTAESPRSP GLPDFAAMPG ARPGPMPEQI 300
    RPQLATLVDS PPAGEQWLHE IKFDGYRLLL IIDNSKARLM TRGGQDWTHR 350
    FPELARAAGG LTLRRAVLDG EAVVLDERGR PDFQALQNVL KGLSGGTLAM 400
    YLFDMPYAEG QDLSGCALIE RKEALRSVLG AIGQTPSPLR FSDHIVGKGK 450
    LVLENACQMG LEGIVSKRAD AHYEPRRAPT WLKSKCGHRQ EVVVAGWTDP 500
    KGQRTGFGAL LVGVHDRQGR LIYAGKVGTG YDTQVLGDLS GRLAGLATDD 550
    AAFADTHRVG SLADVHWVRP ELVAEVDFAG WTRDGIMRHP SFKGLREDKP 600
    PNEVVRENPM EPKARESMRK QHVPAKTGRA KGAIKLTHPR KVLVPYTGLT 650
    KIGLADYYRE VAGFMLPHVV GRPLSLVRCP GGLGEGCFFQ RHPAGGVPHG 700
    VQGVRVLEKG HERTWLSVSD LDGLLALVQL GVLEIHCWGA RNEDLERPDR 750
    LVFDLDPGED VEPARVTAAV LELREFLEGL GLTGFAKATG GKGFHIVLPL 800
    QRKPGWQELR EFARAVAEEL AVRKPGGFVS VAGKARRSGR IYIDWLRNAR 850
    GASSIAPYST RARPGAPVAV PLTWEELTAG FAPNSFDVQA VRSRVASLRA 900
    DPWEGFFSLR QGLSASMWRA LGRKRPAGSL I 931
    Length:931
    Mass (Da):101,977
    Last modified:June 28, 2011 - v1
    Checksum:iA5A826C20A1691CC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003221 Genomic DNA. Translation: EGJ48665.1.
    RefSeqiYP_005050324.1. NC_016629.1.

    Genome annotation databases

    EnsemblBacteriaiEGJ48665; EGJ48665; Desaf_0308.
    GeneIDi11567218.
    KEGGidaf:Desaf_0308.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003221 Genomic DNA. Translation: EGJ48665.1 .
    RefSeqi YP_005050324.1. NC_016629.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai EGJ48665 ; EGJ48665 ; Desaf_0308 .
    GeneIDi 11567218.
    KEGGi daf:Desaf_0308.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci DAFR690850:GHYW-316-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Walvis BayImported.

    Entry informationi

    Entry nameiF3YU59_DESAF
    AccessioniPrimary (citable) accession number: F3YU59
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 28, 2011
    Last sequence update: June 28, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3