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F2XBU9 (F2XBU9_VIBFL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
OrganismVibrio fluvialis EMBL AEA39183.1
Taxonomic identifier676 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length453 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region4 – 63Sulfate binding PDB 4E3Q PDB 4E3R

Sites

Metal binding1011Sodium; via carbonyl oxygen PDB 4E3Q PDB 4E3R
Metal binding1021Sodium PDB 4E3Q PDB 4E3R
Metal binding1041Sodium; via carbonyl oxygen PDB 4E3Q PDB 4E3R
Metal binding1061Sodium; via carbonyl oxygen PDB 4E3Q PDB 4E3R

Sequences

Sequence LengthMass (Da)Tools
F2XBU9 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: 882C67989E909154

FASTA45350,131
        10         20         30         40         50         60 
MNKPQSWEAR AETYSLYGFT DMPSLHQRGT VVVTHGEGPY IVDVNGRRYL DANSGLWNMV 

        70         80         90        100        110        120 
AGFDHKGLID AAKAQYERFP GYHAFFGRMS DQTVMLSEKL VEVSPFDSGR VFYTNSGSEA 

       130        140        150        160        170        180 
NDTMVKMLWF LHAAEGKPQK RKILTRWNAY HGVTAVSASM TGKPYNSVFG LPLPGFVHLT 

       190        200        210        220        230        240 
CPHYWRYGEE GETEEQFVAR LARELEETIQ REGADTIAGF FAEPVMGAGG VIPPAKGYFQ 

       250        260        270        280        290        300 
AILPILRKYD IPVISDEVIC GFGRTGNTWG CVTYDFTPDA IISSKNLTAG FFPMGAVILG 

       310        320        330        340        350        360 
PELSKRLETA IEAIEEFPHG FTASGHPVGC AIALKAIDVV MNEGLAENVR RLAPRFEERL 

       370        380        390        400        410        420 
KHIAERPNIG EYRGIGFMWA LEAVKDKASK TPFDGNLSVS ERIANTCTDL GLICRPLGQS 

       430        440        450 
VVLCPPFILT EAQMDEMFDK LEKALDKVFA EVA 

« Hide

References

[1]"Purification, characterization, and molecular cloning of a novel amine:pyruvate transaminase from Vibrio fluvialis JS17."
Shin J.S., Yun H., Jang J.W., Park I., Kim B.G.
Appl. Microbiol. Biotechnol. 61:463-471(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: JS17 EMBL AEA39183.1.
[2]"Crystal structure of the first omega-transaminase at 2.0A resolution."
Park H.H., Jang T.
Submitted (JUL-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).
[3]Shin J.-S., Yun H., Jang J.-W., Park I., Kim B.-G.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: JS17 EMBL AEA39183.1.
[4]"Redesigning and characterizing the substrate specificity and activity of Vibrio fluvialis aminotransferase for the synthesis of imagabalin."
Midelfort K.S., Kumar R., Han S., Karmilowicz M.J., McConnell K., Gehlhaar D.K., Mistry A., Chang J.S., Anderson M., Villalobos A., Minshull J., Govindarajan S., Wong J.W.
Protein Eng. Des. Sel. 26:25-33(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) IN COMPLEX WITH SODIUM AND SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
HQ418483 Genomic DNA. Translation: AEA39183.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3NUIX-ray2.00A/B1-453[»]
4E3QX-ray1.90A/B/C/D1-453[»]
4E3RX-ray1.90A/B/C/D1-453[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Enzyme and pathway databases

BioCycMetaCyc:MONOMER-17645.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceF2XBU9.

Entry information

Entry nameF2XBU9_VIBFL
AccessionPrimary (citable) accession number: F2XBU9
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 16, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)