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Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

SVEN_6394

Organism
Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSVEN953739-WGS:GSXO-6474-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigCImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:SVEN_6394Imported
OrganismiStreptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745)Imported
Taxonomic identifieri953739 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000006854: Chromosome

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2REZ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVSLGLADK SRIPDNRLMD LPVMPPVKPM LAKSVKRIPP GMQYEAKWDG
60 70 80 90 100
FRAIVHRDGP ELVIGSRTGK PLTRYFPELV EALAARLPER CVVDGEIVIE
110 120 130 140 150
HEGHLDFDRL SERIHPADSR VRMLAETTPA RFVAFDLLAL GDDALLDTPL
160 170 180 190 200
SERRATLERV FAGVDAPVHL APATHDPELA ARWFDQYEGA GLDGVIAKPL
210 220 230 240 250
DLPYRPDARL MYKIKHERTA DVVVAGYRFH KSGPVVGSLL LGLYDDKGAL
260 270 280 290 300
QHVGVCAAFT ARRRAELIEE LEPLRMDPPD GHPWAAWAEE AAHAGARLPG
310 320 330 340 350
APSRWSGKKD LSWVALRPER VCEVGYDHME GDRFRHTAQF KRWRPDRTPE
360 370
SCGYGQLDEP VSYDLSEILG
Length:370
Mass (Da):41,317
Last modified:May 31, 2011 - v1
Checksum:iD2959DA4F63A10B9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR845719 Genomic DNA. Translation: CCA59680.1.
RefSeqiYP_006881939.1. NC_018750.1.

Genome annotation databases

EnsemblBacteriaiCCA59680; CCA59680; SVEN_6394.
GeneIDi13820327.
KEGGisve:SVEN_6394.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR845719 Genomic DNA. Translation: CCA59680.1.
RefSeqiYP_006881939.1. NC_018750.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCA59680; CCA59680; SVEN_6394.
GeneIDi13820327.
KEGGisve:SVEN_6394.

Enzyme and pathway databases

BioCyciSVEN953739-WGS:GSXO-6474-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome-wide analysis of the role of GlnR in Streptomyces venezuelae provides new insights into global nitrogen regulation in actinomycetes."
    Pullan S.T., Chandra G., Bibb M.J., Merrick M.
    BMC Genomics 12:175-175(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745Imported.

Entry informationi

Entry nameiF2REZ5_STRVP
AccessioniPrimary (citable) accession number: F2REZ5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: March 4, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.