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F2LXU4 (F2LXU4_HIPMA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
Ordered Locus Names:Hipma_1379 EMBL AEA34335.1, Hipma_1392 EMBL AEA34348.1
OrganismHippea maritima (strain ATCC 700847 / DSM 10411 / MH2) [Complete proteome] [HAMAP] EMBL AEA34335.1
Taxonomic identifier760142 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaDesulfurellalesDesulfurellaceaeHippea

Protein attributes

Sequence length394 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
F2LXU4 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: A7999C34D48A9388

FASTA39443,542
        10         20         30         40         50         60 
MAKEKYVRSK PHVNIGTIGH VDHGKTTLTA AITKVLAEKG KAEFKDYNEI DNAPEERERG 

        70         80         90        100        110        120 
VTINTAHVEY ETDKRHYAHV DCPGHADYIK NMITGAAQMD GAILVVSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLARQVNVPY IVVFLNKTDM VDDPELIDLV EMEVRELLSK YDFPGDDVPV IRGSALKALE 

       190        200        210        220        230        240 
GDPEAKKAIE ELMDAVDEYI PTPQREADKP FLMPIEDIFS ISGRGTVVTG RVERGVLKPG 

       250        260        270        280        290        300 
EEIEIVGFGE TRKTVATSLE MFRKILDEAI AGDNVGVLLR GIKKEEVERG MVLAKPGSIT 

       310        320        330        340        350        360 
PHKKFKAQVY VLTKDEGGRH TPFFEGYRPQ FYIRTTDVTG TVHLPEGVEM VMPGDNVELT 

       370        380        390 
VELIAPVALE KETRFAIREG GKTVGAGVIT EILE 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2))."
Neupane S., Hogberg N., Alstrom S., Lucas S., Han J., Lipudus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C., Detter J.C., Tapia R., Fiebig A., Land M. expand/collapse author list , Hauser L., Krypides N.C., Ivanova N., Pagani I., Klenk H.-P., Woyke T., Finlay R.D.
Stand. Genomic Sci. 4:303-311(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 10411 EMBL AEA34335.1.
[2]"The complete genome of Hippea maritima DSM 10411."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Mikhailova N., Lu M., Detter J.C., Tapia R., Han C., Land M., Hauser L. expand/collapse author list , Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Schroeder M., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700847 / DSM 10411 / MH2 and DSM 10411.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002606 Genomic DNA. Translation: AEA34335.1.
CP002606 Genomic DNA. Translation: AEA34348.1.
RefSeqYP_004340394.1. NC_015318.1.
YP_004340407.1. NC_015318.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA34335; AEA34335; Hipma_1379.
AEA34348; AEA34348; Hipma_1392.
GeneID10392732.
10392746.
KEGGhmr:Hipma_1379.
hmr:Hipma_1392.
PATRIC54413509. VBIHipMar155866_1405.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.
OMAGTEMCMP.

Enzyme and pathway databases

BioCycHMAR760142:GHVE-1424-MONOMER.
HMAR760142:GHVE-1438-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF2LXU4_HIPMA
AccessionPrimary (citable) accession number: F2LXU4
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: June 11, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)