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Protein
Submitted name:

DNA primase, small subunit

Gene

bgla_1g12430

Organism
Burkholderia gladioli (strain BSR3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBGLA999541:GHSQ-1271-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA primase, small subunitImported
Gene namesi
Ordered Locus Names:bgla_1g12430Imported
OrganismiBurkholderia gladioli (strain BSR3)Imported
Taxonomic identifieri999541 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000008316 Componenti: Chromosome 1

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiMISSPDK.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2LD61-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASKLAEYQR KRRFDASPEP AGKRGAQARP RHDPERELHF VVQEHHARRL
60 70 80 90 100
HYDFRLELDG VLKSWAVPKG PSTEPAEKRL AVHVEDHPLD YAGFEGEIPP
110 120 130 140 150
GHYGAGSVRI DDQGVWRPDG GIAGARRGYR EGKLSFELDG HRLHGRWSLV
160 170 180 190 200
RTHLPERNGK SSWLLIKARD EQAGPPGGER IKAARKQPAT AAAKRAGERA
210 220 230 240 250
ETHGDKHAEK HVEKQAEKRG APPPRGKRAA DRAGRREALP ATLAPQLATL
260 270 280 290 300
VAAPPEGEDW RYEMKFDGYR VLIRIAGRGR RRSVQVFTRE GKDWSAKFRR
310 320 330 340 350
QCAALADLPV NNAWLDAEAV VLDARGLPDF GALQQALSAG EDAAIVFFVF
360 370 380 390 400
DLPFLDGRAL ADLPLDTRRE RLAACFGGAG RQAVQLSPTL KGEPAELLAA
410 420 430 440 450
ASRAGLEGLI GKRADSPYRA GRSASWIKLK CRQRQEFVIG GFSEPRGSRS
460 470 480 490 500
GFGALLLGVH ERPAQGRRRA GGLAYVGRVG TGFDRRALDA IAARLRKIER
510 520 530 540 550
GDAPFAVPPA ERGDAVHWVE PRLVAECEFA GWTADGLVRQ AAFIGLREDK
560 570 580 590 600
PAGQIVRETA APAGGQPTGG RMRTDHQATG SRSRGKAANH ATGRNDDATV
610 620 630 640 650
AGVRVTHPER VVDTESGLRK IDVVRYYAAI AEHLLPQLAG RPVSLVRYMK
660 670 680 690 700
GIDGPSFFQK HAGPRGMGFV TRHPGLDPGH DALITLDDRE ALVGAAQFDA
710 720 730 740 750
LEFHTWNACV DRIERPDRLV FDLDPDPALP WRAMIEAAQA LRALLDALGL
760 770 780 790 800
PCFCKTSGGK GLHLVVPITR HASWDQARDF SQAVAQHLAG VAPERFSAKM
810 820 830 840 850
GAQNRKGRIF VDYLRNGRGA STVAAWSARA RPGMGVSVPI DWDELPGTRG
860 870 880 890
GAQWTIAEVP QRLASLRRDP WDGYEAARRR LTAAMRERLG KL
Length:892
Mass (Da):97,663
Last modified:May 30, 2011 - v1
Checksum:i14BA82267CFDD3D1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002599 Genomic DNA. Translation: AEA59920.1.
RefSeqiYP_004359876.1. NC_015381.1.

Genome annotation databases

EnsemblBacteriaiAEA59920; AEA59920; bgla_1g12430.
GeneIDi10477740.
KEGGibgd:bgla_1g12430.
PATRICi54500578. VBIBurGla188977_4788.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002599 Genomic DNA. Translation: AEA59920.1.
RefSeqiYP_004359876.1. NC_015381.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA59920; AEA59920; bgla_1g12430.
GeneIDi10477740.
KEGGibgd:bgla_1g12430.
PATRICi54500578. VBIBurGla188977_4788.

Phylogenomic databases

KOiK01971.
OMAiMISSPDK.

Enzyme and pathway databases

BioCyciBGLA999541:GHSQ-1271-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BSR3Imported.

Entry informationi

Entry nameiF2LD61_BURGS
AccessioniPrimary (citable) accession number: F2LD61
Entry historyi
Integrated into UniProtKB/TrEMBL: May 30, 2011
Last sequence update: May 30, 2011
Last modified: January 6, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.