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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Arcve_0209

Organism
Archaeoglobus veneficus (strain DSM 11195 / SNP6)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAVEN693661:GHD5-212-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Arcve_0209Imported
OrganismiArchaeoglobus veneficus (strain DSM 11195 / SNP6)Imported
Taxonomic identifieri693661 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
ProteomesiUP000008136 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF2KNL8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiVEVKYGQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2KNL8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDWFNRKIK PMLAVRGKPF SSDDYIYEIK WDGTRCIAFV DVGKKRLRLQ
60 70 80 90 100
NRRLIEIAYR YPELDFFDFE SQNAVLDGEI VVFHNGKPSF PLLQQRDHVD
110 120 130 140 150
SRLKIEILSK RIPAVYIAFD VLYTASDGWI MNLPLVERKK ILDELAEEAR
160 170 180 190 200
RVTKSEFIEG AGVEFYRKAI EMGLEGVMAK RKNSTYQPGK RSAAWVKMKK
210 220 230 240 250
RKTLDCIIVG WLEGEGVREG KFGSLVLALK SGDKLVHVGQ VGTGFESDFI
260 270 280 290 300
DWFYEKLKEI EISKPWFEAE FKRRVHWVKP VYVCEVEFLE VTEDGKLRAP
310 320
VFLRLRDDKG PDECTVEGLY GLVD
Length:324
Mass (Da):37,620
Last modified:May 31, 2011 - v1
Checksum:iC1A92EF1E303A35E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002588 Genomic DNA. Translation: AEA46246.1.
RefSeqiYP_004340961.1. NC_015320.1.

Genome annotation databases

EnsemblBacteriaiAEA46246; AEA46246; Arcve_0209.
GeneIDi10393301.
KEGGiave:Arcve_0209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002588 Genomic DNA. Translation: AEA46246.1.
RefSeqiYP_004340961.1. NC_015320.1.

3D structure databases

ProteinModelPortaliF2KNL8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA46246; AEA46246; Arcve_0209.
GeneIDi10393301.
KEGGiave:Arcve_0209.

Phylogenomic databases

KOiK01971.
OMAiVEVKYGQ.

Enzyme and pathway databases

BioCyciAVEN693661:GHD5-212-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SNP6.

Entry informationi

Entry nameiF2KNL8_ARCVS
AccessioniPrimary (citable) accession number: F2KNL8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 29, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.