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F2KHD2

- F2KHD2_PSEBN

UniProt

F2KHD2 - F2KHD2_PSEBN

Protein
Submitted name:

Putative DNA ligase (ATP)

Gene

PSEBR_a2838

Organism
Pseudomonas brassicacearum (strain NFM421)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (31 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPBRA994484:GJWC-3054-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative DNA ligase (ATP)Imported
    Gene namesi
    ORF Names:PSEBR_a2838Imported
    OrganismiPseudomonas brassicacearum (strain NFM421)Imported
    Taxonomic identifieri994484 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000006692: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F2KHD2-1 [UniParc]FASTAAdd to Basket

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    MSSKTLDDYN RMRNFAATPE PAAKRSRKSA KTAHALQFCI QKHDASRLHY    50
    DFRLELDGAL KSWAVPKGPS LDPKAKRLAV HVEDHPLDYA TFEGNIPEGH 100
    YGAGDVIVWD RGVWIPQDDP HEAYEKGRLK FELQGEKLSG LWNLVRTHMP 150
    GKQEQWFLIK HQDQAARPES EYDVVQAEPN SVLSDRTLVP KRRGKAAAAK 200
    AVKQPEKAVQ AKSPRGAAKT TLSGAVAGPL PDTLKPELAT LVESAPDGEW 250
    LYEIKFDGYR VMACIEHGDV RLLTRNGHDW THKLPRQAEA LAELGLESAW 300
    LDGEMVVAND QGVPDFQALQ NAFEAGSSGK IAYYLFDMPY LNGMDLRKVP 350
    VQERRAALAA VLEPNESPLL RFSDAFEETP EALLNSACQM QMEGLIGKRI 400
    GSAYVSRRSN DWIKLKCKNR QEFVVVGFSD PKGARSAFGA LLLGLHDADS 450
    GQLRYAGKVG TGFNETTLKS IYQQLLPLET KKAAVVNPPS GYEAKGVHWL 500
    EPTLLAEVAF AEMTKDGSVR HAVFHGLRND KPAKDITQEL VKPVKKTAAA 550
    KKTKAKHEPG ATPAKTKSKA KAPALDGKVR ITHPERVIDA SSGTTKLQLA 600
    EYYASVAEFI LPELADRPVA LVRAPDGIAG ELFFQKNAER LAIPGITSLD 650
    KALTGQPVMI INNAEALIGA VQMSTVELHT WNATSVDLDK PDRFVLDLDP 700
    DPALPWKSMV EATQLTLSVL DELGLKAFLK TSGGKGIHVV VPLTRKLGWD 750
    EVKGFSHAIV SHMAKLLPDR FSAVSGPKNR VGRIFIDYLR NGLGATTICA 800
    YAARTREGLP VSVPVFREEV AELKGANLWN VHNVHERLAE VGHEPWAGLK 850
    RTRQSITAEM RRRIGMRETD K 871
    Length:871
    Mass (Da):95,952
    Last modified:May 31, 2011 - v1
    Checksum:i95188E4D36A44B49
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002585 Genomic DNA. Translation: AEA69138.1.
    RefSeqiWP_013693346.1. NC_015379.1.
    YP_004354142.1. NC_015379.1.

    Genome annotation databases

    EnsemblBacteriaiAEA69138; AEA69138; PSEBR_a2838.
    GeneIDi10471863.
    KEGGipba:PSEBR_a2838.
    PATRICi54513338. VBIPseBra188168_3019.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002585 Genomic DNA. Translation: AEA69138.1 .
    RefSeqi WP_013693346.1. NC_015379.1.
    YP_004354142.1. NC_015379.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEA69138 ; AEA69138 ; PSEBR_a2838 .
    GeneIDi 10471863.
    KEGGi pba:PSEBR_a2838.
    PATRICi 54513338. VBIPseBra188168_3019.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PBRA994484:GJWC-3054-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum."
      Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Vacherie B., Santaella C., Heulin T., Achouak W.
      J. Bacteriol. 193:3146-3146(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NFM421Imported.
    2. "Complete Genome Sequence of a beneficial plant roots-associated bacterium Pseudomonas brassicacearum."
      Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Santaella C., Heulin T., Achouak W.
      Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NFM421.

    Entry informationi

    Entry nameiF2KHD2_PSEBN
    AccessioniPrimary (citable) accession number: F2KHD2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 31, 2011
    Last sequence update: May 31, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3