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F2KHD2

- F2KHD2_PSEBN

UniProt

F2KHD2 - F2KHD2_PSEBN

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Protein
Submitted name:

Putative DNA ligase (ATP)

Gene

PSEBR_a2838

Organism
Pseudomonas brassicacearum (strain NFM421)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPBRA994484:GJWC-3054-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase (ATP)Imported
Gene namesi
ORF Names:PSEBR_a2838Imported
OrganismiPseudomonas brassicacearum (strain NFM421)Imported
Taxonomic identifieri994484 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006692: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2KHD2-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSSKTLDDYN RMRNFAATPE PAAKRSRKSA KTAHALQFCI QKHDASRLHY
60 70 80 90 100
DFRLELDGAL KSWAVPKGPS LDPKAKRLAV HVEDHPLDYA TFEGNIPEGH
110 120 130 140 150
YGAGDVIVWD RGVWIPQDDP HEAYEKGRLK FELQGEKLSG LWNLVRTHMP
160 170 180 190 200
GKQEQWFLIK HQDQAARPES EYDVVQAEPN SVLSDRTLVP KRRGKAAAAK
210 220 230 240 250
AVKQPEKAVQ AKSPRGAAKT TLSGAVAGPL PDTLKPELAT LVESAPDGEW
260 270 280 290 300
LYEIKFDGYR VMACIEHGDV RLLTRNGHDW THKLPRQAEA LAELGLESAW
310 320 330 340 350
LDGEMVVAND QGVPDFQALQ NAFEAGSSGK IAYYLFDMPY LNGMDLRKVP
360 370 380 390 400
VQERRAALAA VLEPNESPLL RFSDAFEETP EALLNSACQM QMEGLIGKRI
410 420 430 440 450
GSAYVSRRSN DWIKLKCKNR QEFVVVGFSD PKGARSAFGA LLLGLHDADS
460 470 480 490 500
GQLRYAGKVG TGFNETTLKS IYQQLLPLET KKAAVVNPPS GYEAKGVHWL
510 520 530 540 550
EPTLLAEVAF AEMTKDGSVR HAVFHGLRND KPAKDITQEL VKPVKKTAAA
560 570 580 590 600
KKTKAKHEPG ATPAKTKSKA KAPALDGKVR ITHPERVIDA SSGTTKLQLA
610 620 630 640 650
EYYASVAEFI LPELADRPVA LVRAPDGIAG ELFFQKNAER LAIPGITSLD
660 670 680 690 700
KALTGQPVMI INNAEALIGA VQMSTVELHT WNATSVDLDK PDRFVLDLDP
710 720 730 740 750
DPALPWKSMV EATQLTLSVL DELGLKAFLK TSGGKGIHVV VPLTRKLGWD
760 770 780 790 800
EVKGFSHAIV SHMAKLLPDR FSAVSGPKNR VGRIFIDYLR NGLGATTICA
810 820 830 840 850
YAARTREGLP VSVPVFREEV AELKGANLWN VHNVHERLAE VGHEPWAGLK
860 870
RTRQSITAEM RRRIGMRETD K
Length:871
Mass (Da):95,952
Last modified:May 31, 2011 - v1
Checksum:i95188E4D36A44B49
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002585 Genomic DNA. Translation: AEA69138.1.
RefSeqiYP_004354142.1. NC_015379.1.

Genome annotation databases

EnsemblBacteriaiAEA69138; AEA69138; PSEBR_a2838.
GeneIDi10471863.
KEGGipba:PSEBR_a2838.
PATRICi54513338. VBIPseBra188168_3019.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002585 Genomic DNA. Translation: AEA69138.1 .
RefSeqi YP_004354142.1. NC_015379.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEA69138 ; AEA69138 ; PSEBR_a2838 .
GeneIDi 10471863.
KEGGi pba:PSEBR_a2838.
PATRICi 54513338. VBIPseBra188168_3019.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PBRA994484:GJWC-3054-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum."
    Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Vacherie B., Santaella C., Heulin T., Achouak W.
    J. Bacteriol. 193:3146-3146(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NFM421Imported.
  2. "Complete Genome Sequence of a beneficial plant roots-associated bacterium Pseudomonas brassicacearum."
    Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Santaella C., Heulin T., Achouak W.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NFM421.

Entry informationi

Entry nameiF2KHD2_PSEBN
AccessioniPrimary (citable) accession number: F2KHD2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: October 29, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3