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F2KHD2 (F2KHD2_PSEBN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length871 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F2KHD2 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: 95188E4D36A44B49

FASTA87195,952
        10         20         30         40         50         60 
MSSKTLDDYN RMRNFAATPE PAAKRSRKSA KTAHALQFCI QKHDASRLHY DFRLELDGAL 

        70         80         90        100        110        120 
KSWAVPKGPS LDPKAKRLAV HVEDHPLDYA TFEGNIPEGH YGAGDVIVWD RGVWIPQDDP 

       130        140        150        160        170        180 
HEAYEKGRLK FELQGEKLSG LWNLVRTHMP GKQEQWFLIK HQDQAARPES EYDVVQAEPN 

       190        200        210        220        230        240 
SVLSDRTLVP KRRGKAAAAK AVKQPEKAVQ AKSPRGAAKT TLSGAVAGPL PDTLKPELAT 

       250        260        270        280        290        300 
LVESAPDGEW LYEIKFDGYR VMACIEHGDV RLLTRNGHDW THKLPRQAEA LAELGLESAW 

       310        320        330        340        350        360 
LDGEMVVAND QGVPDFQALQ NAFEAGSSGK IAYYLFDMPY LNGMDLRKVP VQERRAALAA 

       370        380        390        400        410        420 
VLEPNESPLL RFSDAFEETP EALLNSACQM QMEGLIGKRI GSAYVSRRSN DWIKLKCKNR 

       430        440        450        460        470        480 
QEFVVVGFSD PKGARSAFGA LLLGLHDADS GQLRYAGKVG TGFNETTLKS IYQQLLPLET 

       490        500        510        520        530        540 
KKAAVVNPPS GYEAKGVHWL EPTLLAEVAF AEMTKDGSVR HAVFHGLRND KPAKDITQEL 

       550        560        570        580        590        600 
VKPVKKTAAA KKTKAKHEPG ATPAKTKSKA KAPALDGKVR ITHPERVIDA SSGTTKLQLA 

       610        620        630        640        650        660 
EYYASVAEFI LPELADRPVA LVRAPDGIAG ELFFQKNAER LAIPGITSLD KALTGQPVMI 

       670        680        690        700        710        720 
INNAEALIGA VQMSTVELHT WNATSVDLDK PDRFVLDLDP DPALPWKSMV EATQLTLSVL 

       730        740        750        760        770        780 
DELGLKAFLK TSGGKGIHVV VPLTRKLGWD EVKGFSHAIV SHMAKLLPDR FSAVSGPKNR 

       790        800        810        820        830        840 
VGRIFIDYLR NGLGATTICA YAARTREGLP VSVPVFREEV AELKGANLWN VHNVHERLAE 

       850        860        870 
VGHEPWAGLK RTRQSITAEM RRRIGMRETD K 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum."
Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Vacherie B., Santaella C., Heulin T., Achouak W.
J. Bacteriol. 193:3146-3146(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NFM421 EMBL AEA69138.1.
[2]"Complete Genome Sequence of a beneficial plant roots-associated bacterium Pseudomonas brassicacearum."
Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Santaella C., Heulin T., Achouak W.
Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NFM421.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002585 Genomic DNA. Translation: AEA69138.1.
RefSeqYP_004354142.1. NC_015379.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA69138; AEA69138; PSEBR_a2838.
GeneID10471863.
KEGGpba:PSEBR_a2838.
PATRIC54513338. VBIPseBra188168_3019.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycPBRA994484:GJWC-3054-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF2KHD2_PSEBN
AccessionPrimary (citable) accession number: F2KHD2
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)