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F2KHD2

- F2KHD2_PSEBN

UniProt

F2KHD2 - F2KHD2_PSEBN

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Protein
Submitted name: Putative DNA ligase (ATP)
Gene
PSEBR_a2838
Organism
Pseudomonas brassicacearum (strain NFM421)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPBRA994484:GJWC-3054-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase (ATP)Imported
Gene namesi
ORF Names:PSEBR_a2838Imported
OrganismiPseudomonas brassicacearum (strain NFM421)Imported
Taxonomic identifieri994484 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006692: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2KHD2-1 [UniParc]FASTAAdd to Basket

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MSSKTLDDYN RMRNFAATPE PAAKRSRKSA KTAHALQFCI QKHDASRLHY    50
DFRLELDGAL KSWAVPKGPS LDPKAKRLAV HVEDHPLDYA TFEGNIPEGH 100
YGAGDVIVWD RGVWIPQDDP HEAYEKGRLK FELQGEKLSG LWNLVRTHMP 150
GKQEQWFLIK HQDQAARPES EYDVVQAEPN SVLSDRTLVP KRRGKAAAAK 200
AVKQPEKAVQ AKSPRGAAKT TLSGAVAGPL PDTLKPELAT LVESAPDGEW 250
LYEIKFDGYR VMACIEHGDV RLLTRNGHDW THKLPRQAEA LAELGLESAW 300
LDGEMVVAND QGVPDFQALQ NAFEAGSSGK IAYYLFDMPY LNGMDLRKVP 350
VQERRAALAA VLEPNESPLL RFSDAFEETP EALLNSACQM QMEGLIGKRI 400
GSAYVSRRSN DWIKLKCKNR QEFVVVGFSD PKGARSAFGA LLLGLHDADS 450
GQLRYAGKVG TGFNETTLKS IYQQLLPLET KKAAVVNPPS GYEAKGVHWL 500
EPTLLAEVAF AEMTKDGSVR HAVFHGLRND KPAKDITQEL VKPVKKTAAA 550
KKTKAKHEPG ATPAKTKSKA KAPALDGKVR ITHPERVIDA SSGTTKLQLA 600
EYYASVAEFI LPELADRPVA LVRAPDGIAG ELFFQKNAER LAIPGITSLD 650
KALTGQPVMI INNAEALIGA VQMSTVELHT WNATSVDLDK PDRFVLDLDP 700
DPALPWKSMV EATQLTLSVL DELGLKAFLK TSGGKGIHVV VPLTRKLGWD 750
EVKGFSHAIV SHMAKLLPDR FSAVSGPKNR VGRIFIDYLR NGLGATTICA 800
YAARTREGLP VSVPVFREEV AELKGANLWN VHNVHERLAE VGHEPWAGLK 850
RTRQSITAEM RRRIGMRETD K 871
Length:871
Mass (Da):95,952
Last modified:May 31, 2011 - v1
Checksum:i95188E4D36A44B49
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002585 Genomic DNA. Translation: AEA69138.1.
RefSeqiWP_013693346.1. NC_015379.1.
YP_004354142.1. NC_015379.1.

Genome annotation databases

EnsemblBacteriaiAEA69138; AEA69138; PSEBR_a2838.
GeneIDi10471863.
KEGGipba:PSEBR_a2838.
PATRICi54513338. VBIPseBra188168_3019.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002585 Genomic DNA. Translation: AEA69138.1 .
RefSeqi WP_013693346.1. NC_015379.1.
YP_004354142.1. NC_015379.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEA69138 ; AEA69138 ; PSEBR_a2838 .
GeneIDi 10471863.
KEGGi pba:PSEBR_a2838.
PATRICi 54513338. VBIPseBra188168_3019.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PBRA994484:GJWC-3054-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum."
    Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Vacherie B., Santaella C., Heulin T., Achouak W.
    J. Bacteriol. 193:3146-3146(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NFM421Imported.
  2. "Complete Genome Sequence of a beneficial plant roots-associated bacterium Pseudomonas brassicacearum."
    Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Santaella C., Heulin T., Achouak W.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NFM421.

Entry informationi

Entry nameiF2KHD2_PSEBN
AccessioniPrimary (citable) accession number: F2KHD2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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