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Protein

Xylose isomerase

Gene

xylA

Organism
Pseudomonas brassicacearum (strain NFM421)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotationNote: Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei100UniRule annotation1
Active sitei103UniRule annotation1
Metal bindingi231Magnesium 1UniRule annotation1
Metal bindingi267Magnesium 1UniRule annotation1
Metal bindingi267Magnesium 2UniRule annotation1
Metal bindingi270Magnesium 2UniRule annotation1
Metal bindingi295Magnesium 1UniRule annotation1
Metal bindingi306Magnesium 2UniRule annotation1
Metal bindingi308Magnesium 2UniRule annotation1
Metal bindingi338Magnesium 1UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationImported

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotationSAAS annotation (EC:5.3.1.5UniRule annotationSAAS annotation)
Gene namesi
Name:xylAUniRule annotation
ORF Names:PSEBR_a2597Imported
OrganismiPseudomonas brassicacearum (strain NFM421)Imported
Taxonomic identifieri994484 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000006692 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliF2KFZ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotationSAAS annotation

Phylogenomic databases

KOiK01805.
OMAiHTFQHEL.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2KFZ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYFPAVDKI RYEGPASDSP LAFRHYDANK LVLGKPMREH LRMAVCYWHT
60 70 80 90 100
FVWPGSDVFG AGTFKRPWQH AGDPMELATG KAEAAFEFFS KLGIDYYCFH
110 120 130 140 150
DTDVAPEGSS LKEYREHFAL MVDHLERHQE ETGIKLLWGT ANCFSNPRFA
160 170 180 190 200
AGAASNPDPQ VFACAAAQVF SAMNATQRLK GSNYVLWGGR EGYETLLNTD
210 220 230 240 250
LKREREQLGR FMRMVVEHKH KIGFKGDLLI EPKPQEPTKH QYDYDSATVF
260 270 280 290 300
GFLQQFGLEN EIKVNIEANH ATLAGHSFHH EIATAVSLGI FGSIDANRGD
310 320 330 340 350
PQNGWDTDQF PNSVEEMTLA TYEILKAGGF RNGGFNFDSK VRRQSLDELD
360 370 380 390 400
LFHGHVAAMD VLALALERAA AMVQNDQLQQ FKDQRYAGWQ QPFGKAVLAG
410 420 430
DFSLESLAEH AFTNELNPQA VSGRQEMLEN VVNRFIYP
Length:438
Mass (Da):49,316
Last modified:May 31, 2011 - v1
Checksum:i48F9674A96F6FDC6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002585 Genomic DNA. Translation: AEA68887.1.
RefSeqiWP_013693218.1. NC_015379.1.

Genome annotation databases

EnsemblBacteriaiAEA68887; AEA68887; PSEBR_a2597.
KEGGipba:PSEBR_a2597.
PATRICi54512824. VBIPseBra188168_2765.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002585 Genomic DNA. Translation: AEA68887.1.
RefSeqiWP_013693218.1. NC_015379.1.

3D structure databases

ProteinModelPortaliF2KFZ1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA68887; AEA68887; PSEBR_a2597.
KEGGipba:PSEBR_a2597.
PATRICi54512824. VBIPseBra188168_2765.

Phylogenomic databases

KOiK01805.
OMAiHTFQHEL.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF2KFZ1_PSEBN
AccessioniPrimary (citable) accession number: F2KFZ1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: November 30, 2016
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.