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F2K8L8 (F2K8L8_PSEBN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:PSEBR_a1156 EMBL AEA67334.1
OrganismPseudomonas brassicacearum (strain NFM421) [Complete proteome] [HAMAP] EMBL AEA67334.1
Taxonomic identifier994484 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length562 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEA67334.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F2K8L8 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: A0B56CC68DFE280D

FASTA56262,874
        10         20         30         40         50         60 
MKAFAELYAE LDATTSSNAK LAAMQAYFTK ASPQDAAWAV YFLSGGRPRQ LVPVKILREL 

        70         80         90        100        110        120 
AVQVSGLSLW LFEESYQAVG DLAETISLVL PESPHSSDEG LALWIEEKLL PLRGESPEIL 

       130        140        150        160        170        180 
AEQLPALWAQ LDRPSLMLCI KLITGSFRVG VSKLLVTRAL AGMANLDSKR VAQRLVGYTD 

       190        200        210        220        230        240 
LSHRPTAASY LKLIAAESAD EHAQRGGQPY PFFLAHALSA PVEQFDTLLG PANDWQVEWK 

       250        260        270        280        290        300 
WDGIRSQVIK RDGHLWVWSR GEELVTERFP ELHALAQVLP DGTVIDGEIV VWKTARPVTG 

       310        320        330        340        350        360 
DAFDPDAPLQ PAVQPFALLQ QRIGRKTLGK KILEDAPVVV MAYDLLEWQG EDWRSRPQAE 

       370        380        390        400        410        420 
RRERLEALIA SVHSPVLLPS PTVTGQDWFD LARQREASRR LGVEGMMLKA RNALYGVGRT 

       430        440        450        460        470        480 
KDMGVWWKWK IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA VWDNPPDSRE RTLVPFAKAY 

       490        500        510        520        530        540 
SGLTDAEMRQ VDSIVRKTTV EKFGPVSSVT PTLVFELGFE GIALSNRHKS GIAVRFPRML 

       550        560 
RWRQDKTVEE ADTLATLQDL LK 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum."
Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Vacherie B., Santaella C., Heulin T., Achouak W.
J. Bacteriol. 193:3146-3146(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NFM421 EMBL AEA67334.1.
[2]"Complete Genome Sequence of a beneficial plant roots-associated bacterium Pseudomonas brassicacearum."
Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Santaella C., Heulin T., Achouak W.
Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NFM421.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002585 Genomic DNA. Translation: AEA67334.1.
RefSeqYP_004352338.1. NC_015379.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA67334; AEA67334; PSEBR_a1156.
GeneID10470050.
KEGGpba:PSEBR_a1156.
PATRIC54509710. VBIPseBra188168_1224.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycPBRA994484:GJWC-1241-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF2K8L8_PSEBN
AccessionPrimary (citable) accession number: F2K8L8
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)