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F2K8L8

- F2K8L8_PSEBN

UniProt

F2K8L8 - F2K8L8_PSEBN

Protein
Submitted name:

Putative DNA ligase (ATP) (ATP-dependent DNA ligase)

Gene

PSEBR_a1156

Organism
Pseudomonas brassicacearum (strain NFM421)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (31 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPBRA994484:GJWC-1241-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative DNA ligase (ATP) (ATP-dependent DNA ligase)Imported
    Gene namesi
    ORF Names:PSEBR_a1156Imported
    OrganismiPseudomonas brassicacearum (strain NFM421)Imported
    Taxonomic identifieri994484 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000006692: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F2K8L8-1 [UniParc]FASTAAdd to Basket

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    MKAFAELYAE LDATTSSNAK LAAMQAYFTK ASPQDAAWAV YFLSGGRPRQ    50
    LVPVKILREL AVQVSGLSLW LFEESYQAVG DLAETISLVL PESPHSSDEG 100
    LALWIEEKLL PLRGESPEIL AEQLPALWAQ LDRPSLMLCI KLITGSFRVG 150
    VSKLLVTRAL AGMANLDSKR VAQRLVGYTD LSHRPTAASY LKLIAAESAD 200
    EHAQRGGQPY PFFLAHALSA PVEQFDTLLG PANDWQVEWK WDGIRSQVIK 250
    RDGHLWVWSR GEELVTERFP ELHALAQVLP DGTVIDGEIV VWKTARPVTG 300
    DAFDPDAPLQ PAVQPFALLQ QRIGRKTLGK KILEDAPVVV MAYDLLEWQG 350
    EDWRSRPQAE RRERLEALIA SVHSPVLLPS PTVTGQDWFD LARQREASRR 400
    LGVEGMMLKA RNALYGVGRT KDMGVWWKWK IDPFSVDAVL IYAQRGHGRR 450
    ASLYSDYTFA VWDNPPDSRE RTLVPFAKAY SGLTDAEMRQ VDSIVRKTTV 500
    EKFGPVSSVT PTLVFELGFE GIALSNRHKS GIAVRFPRML RWRQDKTVEE 550
    ADTLATLQDL LK 562
    Length:562
    Mass (Da):62,874
    Last modified:May 31, 2011 - v1
    Checksum:iA0B56CC68DFE280D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002585 Genomic DNA. Translation: AEA67334.1.
    RefSeqiYP_004352338.1. NC_015379.1.

    Genome annotation databases

    EnsemblBacteriaiAEA67334; AEA67334; PSEBR_a1156.
    GeneIDi10470050.
    KEGGipba:PSEBR_a1156.
    PATRICi54509710. VBIPseBra188168_1224.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002585 Genomic DNA. Translation: AEA67334.1 .
    RefSeqi YP_004352338.1. NC_015379.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEA67334 ; AEA67334 ; PSEBR_a1156 .
    GeneIDi 10470050.
    KEGGi pba:PSEBR_a1156.
    PATRICi 54509710. VBIPseBra188168_1224.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PBRA994484:GJWC-1241-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum."
      Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Vacherie B., Santaella C., Heulin T., Achouak W.
      J. Bacteriol. 193:3146-3146(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NFM421Imported.
    2. "Complete Genome Sequence of a beneficial plant roots-associated bacterium Pseudomonas brassicacearum."
      Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Santaella C., Heulin T., Achouak W.
      Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NFM421.

    Entry informationi

    Entry nameiF2K8L8_PSEBN
    AccessioniPrimary (citable) accession number: F2K8L8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 31, 2011
    Last sequence update: May 31, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3