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F2K8L8

- F2K8L8_PSEBN

UniProt

F2K8L8 - F2K8L8_PSEBN

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Protein
Submitted name:

Putative DNA ligase (ATP) (ATP-dependent DNA ligase)

Gene
PSEBR_a1156
Organism
Pseudomonas brassicacearum (strain NFM421)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPBRA994484:GJWC-1241-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase (ATP) (ATP-dependent DNA ligase)Imported
Gene namesi
ORF Names:PSEBR_a1156Imported
OrganismiPseudomonas brassicacearum (strain NFM421)Imported
Taxonomic identifieri994484 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006692: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2K8L8-1 [UniParc]FASTAAdd to Basket

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MKAFAELYAE LDATTSSNAK LAAMQAYFTK ASPQDAAWAV YFLSGGRPRQ    50
LVPVKILREL AVQVSGLSLW LFEESYQAVG DLAETISLVL PESPHSSDEG 100
LALWIEEKLL PLRGESPEIL AEQLPALWAQ LDRPSLMLCI KLITGSFRVG 150
VSKLLVTRAL AGMANLDSKR VAQRLVGYTD LSHRPTAASY LKLIAAESAD 200
EHAQRGGQPY PFFLAHALSA PVEQFDTLLG PANDWQVEWK WDGIRSQVIK 250
RDGHLWVWSR GEELVTERFP ELHALAQVLP DGTVIDGEIV VWKTARPVTG 300
DAFDPDAPLQ PAVQPFALLQ QRIGRKTLGK KILEDAPVVV MAYDLLEWQG 350
EDWRSRPQAE RRERLEALIA SVHSPVLLPS PTVTGQDWFD LARQREASRR 400
LGVEGMMLKA RNALYGVGRT KDMGVWWKWK IDPFSVDAVL IYAQRGHGRR 450
ASLYSDYTFA VWDNPPDSRE RTLVPFAKAY SGLTDAEMRQ VDSIVRKTTV 500
EKFGPVSSVT PTLVFELGFE GIALSNRHKS GIAVRFPRML RWRQDKTVEE 550
ADTLATLQDL LK 562
Length:562
Mass (Da):62,874
Last modified:May 31, 2011 - v1
Checksum:iA0B56CC68DFE280D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002585 Genomic DNA. Translation: AEA67334.1.
RefSeqiYP_004352338.1. NC_015379.1.

Genome annotation databases

EnsemblBacteriaiAEA67334; AEA67334; PSEBR_a1156.
GeneIDi10470050.
KEGGipba:PSEBR_a1156.
PATRICi54509710. VBIPseBra188168_1224.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002585 Genomic DNA. Translation: AEA67334.1 .
RefSeqi YP_004352338.1. NC_015379.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEA67334 ; AEA67334 ; PSEBR_a1156 .
GeneIDi 10470050.
KEGGi pba:PSEBR_a1156.
PATRICi 54509710. VBIPseBra188168_1224.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PBRA994484:GJWC-1241-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum."
    Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Vacherie B., Santaella C., Heulin T., Achouak W.
    J. Bacteriol. 193:3146-3146(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NFM421Imported.
  2. "Complete Genome Sequence of a beneficial plant roots-associated bacterium Pseudomonas brassicacearum."
    Ortet P., Barakat M., Lalaouna D., Fochesato S., Barbe V., Santaella C., Heulin T., Achouak W.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NFM421.

Entry informationi

Entry nameiF2K8L8_PSEBN
AccessioniPrimary (citable) accession number: F2K8L8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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