Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase (ATP)

Gene

Marme_1930

Organism
Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMMED717774:GCPW-1981-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Marme_1930Imported
OrganismiMarinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1)Imported
Taxonomic identifieri717774 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaOceanospirillalesMarinomonas
ProteomesiUP000001062 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 PotentialImportedAdd
BLAST
Chaini22 – 275254 PotentialImportedPRO_5000728855Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi717774.Marme_1930.

Structurei

3D structure databases

ProteinModelPortaliF2K2P6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F2K2P6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVSRLVGLM SLLLPCCLFA QDVQLAKVYR EGVPVSEYYV SEKYDGIRAI
60 70 80 90 100
WNGHRLLTKN GHEIHAPDWF THDLPDVWLD GELWSNRNDY RFVASTVLDK
110 120 130 140 150
TPEEAAWRKI TYMVFDAPDY SRPFSERWHI YGELVASLKL NHVQAVQQRE
160 170 180 190 200
LESKEDLYIL LEEITNMDGE GLILHKKSAL FASGRSGNLL KFKRFEDAEA
210 220 230 240 250
SVVSVLPGKG KFKNMMGALL VEMPTGQRFK IGTGFTNVQR MNPPRVGDRV
260 270
TYKYFGFTGT GLPRFASFLR VRPQE
Length:275
Mass (Da):31,529
Last modified:May 31, 2011 - v1
Checksum:iE5E786F7383FC286
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002583 Genomic DNA. Translation: ADZ91179.1.
RefSeqiWP_013661084.1. NC_015276.1.
YP_004313015.1. NC_015276.1.

Genome annotation databases

EnsemblBacteriaiADZ91179; ADZ91179; Marme_1930.
KEGGimme:Marme_1930.
PATRICi47228666. VBIMarMed159599_1990.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002583 Genomic DNA. Translation: ADZ91179.1.
RefSeqiWP_013661084.1. NC_015276.1.
YP_004313015.1. NC_015276.1.

3D structure databases

ProteinModelPortaliF2K2P6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi717774.Marme_1930.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADZ91179; ADZ91179; Marme_1930.
KEGGimme:Marme_1930.
PATRICi47228666. VBIMarMed159599_1990.

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Enzyme and pathway databases

BioCyciMMED717774:GCPW-1981-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1Imported.

Entry informationi

Entry nameiF2K2P6_MARM1
AccessioniPrimary (citable) accession number: F2K2P6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: June 24, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.