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F2JWD6 (F2JWD6_MARM1) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Isocitrate dehydrogenase, NADP-dependent EMBL ADZ90609.1
EC=1.1.1.42 EMBL ADZ90609.1
Gene names
Ordered Locus Names:Marme_1336
OrganismMarinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) [Complete proteome] [HAMAP] EMBL ADZ90609.1
Taxonomic identifier717774 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Oceanospirillales › Marinomonas ›

Protein attributes

Sequence length739 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region132 – 1398Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3491Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5471Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5511Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1451Substrate By similarity PIRSR PIRSR009407-2
Binding site5461Substrate By similarity PIRSR PIRSR009407-2
Site2541Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4191Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
F2JWD6 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: E7DAF5E2241CCA22

FASTA73982,315
        10         20         30         40         50         60 
MSKHTIYYTL TDEAPALATA SLLPIFQAFA KEADINLQLT DISLAARVLS LFTDRLPEDK 

        70         80         90        100        110        120 
QVEDGLSFLG ELTADPDANF IKLPNISASI PQLTATIKEL QSQGYEIPDY PEAPATDEEK 

       130        140        150        160        170        180 
EINSRYSKVL GSAVNPVLRQ GNSDRRAPAA VKGFARKHPH SMGKWQKTSQ THADYMRDGD 

       190        200        210        220        230        240 
FFSSEQSVTM DKAQEVRIEF VNKSGEVDVK KTLPLLEGEV LDGMRMSASK LRDFFEQSLQ 

       250        260        270        280        290        300 
EAKEAGIMWS LHVKATMMKV SHPIVFGHAV TVYYKEVWDK FGDLFDELGV NPNNGIGSVY 

       310        320        330        340        350        360 
DKIKTLPQST QDEILESIHD CYEHRPEIAM VDSVRGITNL HVPSDVIVDA SMPAMIRSSG 

       370        380        390        400        410        420 
KMWGRDGKTK DTKAVMPEST YARIYQEVIN FCKTNGAFDP TTMGTVPNVG LMAQKAEEYG 

       430        440        450        460        470        480 
SHDKTFEVQE NGTMRVRDAE GNVLMQHDVE KGDIWRACQT KDAPIKDWVK LGVTRARNSG 

       490        500        510        520        530        540 
TPAVFWLDAE RAHDNELRKK VKLYLQDHDL EGLEIHIMSY NEAIRFSMER MMRGQDTISV 

       550        560        570        580        590        600 
SGNVLRDYLT DLFPIMELGT SAKMLSIVPM LNGGGMYETG AGGSAPKHVQ QLQEENYLRW 

       610        620        630        640        650        660 
DSLGEFLATA VSFEELGIKQ DNAKAKVLAA ALDRATEQLL DNNKSPSRKV GDIDNRGSHF 

       670        680        690        700        710        720 
YLTMYWAQAL ATQTDDAELA DKFASVAKAL VENESKIVEE LNSVQGKDAG LEGYYHMDLD 

       730 
AVTKVMRPSA TFNEILAAI

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References

[1]"Complete sequence of Marinomonas mediterranea MMB-1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Lucas-Elio P., Johnston A.W.B., Sanchez-Amat A., Woyke T.
Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002583 Genomic DNA. Translation: ADZ90609.1.
RefSeqYP_004312445.1. NC_015276.1.

3D structure databases

ProteinModelPortalF2JWD6.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADZ90609; ADZ90609; Marme_1336.
GeneID10335396.
KEGGmme:Marme_1336.
PATRIC47227410. VBIMarMed159599_1384.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF2JWD6_MARM1
AccessionPrimary (citable) accession number: F2JWD6
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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