Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F2JK99

- F2JK99_CELLD

UniProt

F2JK99 - F2JK99_CELLD

Protein
Submitted name:

Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5

Gene

Clole_3936

Organism
Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) (Clostridium lentocellum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (31 May 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.SAAS annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinSAAS annotation

    Keywords - Ligandi

    RNA-binding, rRNA-bindingSAAS annotation

    Enzyme and pathway databases

    BioCyciCCLO642492:GIWK-4080-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5Imported
    Gene namesi
    Ordered Locus Names:Clole_3936Imported
    OrganismiCellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) (Clostridium lentocellum)Imported
    Taxonomic identifieri642492 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesLachnospiraceaeCellulosilyticum
    ProteomesiUP000008467: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.SAAS annotation

    Family & Domainsi

    Phylogenomic databases

    KOiK02897.

    Family and domain databases

    Gene3Di2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view]
    PfamiPF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.
    TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    F2JK99-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDIITVEKRS VLTKAKQLRR NGIIPSVIYG GSLPESLLVQ IDKNAAKKLL    50
    RCKREGSKME IELDSKLIPV QIKDIDSNIV NNEILHISFQ ALEADKRVNS 100
    KAQIILENTD KVVGVLEQLL FEVPYSALPS DMIDTVVVDL EGLAVGKVLT 150
    LEDIPVFKNE NIDLQVSADS MILKITDRKS S 181
    Length:181
    Mass (Da):20,108
    Last modified:May 31, 2011 - v1
    Checksum:i459CFF0CD6C4356F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002582 Genomic DNA. Translation: ADZ85614.1.
    RefSeqiWP_013658887.1. NC_015275.1.
    YP_004310812.1. NC_015275.1.

    Genome annotation databases

    EnsemblBacteriaiADZ85614; ADZ85614; Clole_3936.
    GeneIDi10333691.
    KEGGicle:Clole_3936.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002582 Genomic DNA. Translation: ADZ85614.1 .
    RefSeqi WP_013658887.1. NC_015275.1.
    YP_004310812.1. NC_015275.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADZ85614 ; ADZ85614 ; Clole_3936 .
    GeneIDi 10333691.
    KEGGi cle:Clole_3936.

    Phylogenomic databases

    KOi K02897.

    Enzyme and pathway databases

    BioCyci CCLO642492:GIWK-4080-MONOMER.

    Family and domain databases

    Gene3Di 2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view ]
    Pfami PF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5Imported.

    Entry informationi

    Entry nameiF2JK99_CELLD
    AccessioniPrimary (citable) accession number: F2JK99
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 31, 2011
    Last sequence update: May 31, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3