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Protein

50S ribosomal protein L25

Gene

Clole_3936

Organism
Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) (Clostridium lentocellum)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinSAAS annotation

Keywords - Ligandi

RNA-binding, rRNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciCCLO642492:GIWK-4080-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25SAAS annotation
Alternative name(s):
General stress protein CTCSAAS annotation
Gene namesi
Ordered Locus Names:Clole_3936Imported
OrganismiCellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) (Clostridium lentocellum)Imported
Taxonomic identifieri642492 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesLachnospiraceaeCellulosilyticum
ProteomesiUP000008467 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.SAAS annotation

Family & Domainsi

Phylogenomic databases

KOiK02897.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view]
PfamiPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomiPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. bL25_bact_ctc. 1 hit.

Sequencei

Sequence statusi: Complete.

F2JK99-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIITVEKRS VLTKAKQLRR NGIIPSVIYG GSLPESLLVQ IDKNAAKKLL
60 70 80 90 100
RCKREGSKME IELDSKLIPV QIKDIDSNIV NNEILHISFQ ALEADKRVNS
110 120 130 140 150
KAQIILENTD KVVGVLEQLL FEVPYSALPS DMIDTVVVDL EGLAVGKVLT
160 170 180
LEDIPVFKNE NIDLQVSADS MILKITDRKS S
Length:181
Mass (Da):20,108
Last modified:May 31, 2011 - v1
Checksum:i459CFF0CD6C4356F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002582 Genomic DNA. Translation: ADZ85614.1.
RefSeqiWP_013658887.1. NC_015275.1.

Genome annotation databases

EnsemblBacteriaiADZ85614; ADZ85614; Clole_3936.
KEGGicle:Clole_3936.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002582 Genomic DNA. Translation: ADZ85614.1.
RefSeqiWP_013658887.1. NC_015275.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADZ85614; ADZ85614; Clole_3936.
KEGGicle:Clole_3936.

Phylogenomic databases

KOiK02897.

Enzyme and pathway databases

BioCyciCCLO642492:GIWK-4080-MONOMER.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view]
PfamiPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomiPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. bL25_bact_ctc. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5Imported.

Entry informationi

Entry nameiF2JK99_CELLD
AccessioniPrimary (citable) accession number: F2JK99
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: July 22, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.