F2JK99 (F2JK99_CELLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 EMBL ADZ85614.1

Gene names

Ordered Locus Names:

Clole_3936

Organism

Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) (Clostridium lentocellum) [Complete proteome] [HAMAP] EMBL ADZ85614.1

Taxonomic identifier

642492 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Lachnospiraceae › Cellulosilyticum › Cellulosilyticum lentocellum

Protein attributes

Sequence length	181 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity. SAAS SAAS020057
Subunit structure	Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity. SAAS SAAS020057

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding SAAS SAAS020057
Molecular function	Ribonucleoprotein Ribosomal protein SAAS SAAS020057
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	5S rRNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F2JK99 [UniParc]. Last modified May 31, 2011. Version 1. Checksum: 459CFF0CD6C4356F	FASTA	181	20,108
	10 20 30 40 50 60 MDIITVEKRS VLTKAKQLRR NGIIPSVIYG GSLPESLLVQ IDKNAAKKLL RCKREGSKME 70 80 90 100 110 120 IELDSKLIPV QIKDIDSNIV NNEILHISFQ ALEADKRVNS KAQIILENTD KVVGVLEQLL 130 140 150 160 170 180 FEVPYSALPS DMIDTVVVDL EGLAVGKVLT LEDIPVFKNE NIDLQVSADS MILKITDRKS S

References

[1]

"Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum." US DOE Joint Genome Institute Miller D.A., Suen G., Bruce D., Copeland A., Cheng J.F., Detter C., Goodwin L.A., Han C.S., Hauser L.J., Land M.L., Lapidus A., Lucas S., Meincke L., Pitluck S., Tapia R., Teshima H., Woyke T., Fox B.G., Angert E.R., Currie C.R. J. Bacteriol. 193:2357-2358(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002582 Genomic DNA. Translation: ADZ85614.1.
RefSeq	YP_004310812.1. NC_015275.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADZ85614; ADZ85614; Clole_3936.
GeneID	10333691.
KEGG	cle:Clole_3936.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K02897.
Enzyme and pathway databases
BioCyc	CCLO642492:GIWK-4080-MONOMER.
Family and domain databases
Gene3D	2.170.120.20. 1 hit. 2.40.240.10. 1 hit.
InterPro	IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl. IPR011035. Ribosomal_L25/Gln-tRNA_synth. IPR020057. Ribosomal_L25_b-dom. IPR001021. Ribosomal_L25_long. IPR020055. Ribosomal_L25_short. [Graphical view]
Pfam	PF01386. Ribosomal_L25p. 1 hit. [Graphical view]
ProDom	PD012503. Ribosomal_L25. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50715. Ribosomal_L25rel. 1 hit.
TIGRFAMs	TIGR00731. ctc_TL5. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F2JK99_CELLD

Accession

Primary (citable) accession number: F2JK99

Entry history

Integrated into UniProtKB/TrEMBL:	May 31, 2011
Last sequence update:	May 31, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)