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F2J5R7 (F2J5R7_POLGS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
F2J5R7 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: 3CA41541106EE42A

FASTA39643,047
        10         20         30         40         50         60 
MAKEKFERTK PHVNIGTIGH VDHGKTTLTA AITMTLAETG GAVAKAYDQI DAAPEEKARG 

        70         80         90        100        110        120 
ITISTAHVEY ETENRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLARQVGVPA LVVFMNKVDQ VDDEELLELV EMELRELLSS YDFPGDDIPI VKGSALAAVE 

       190        200        210        220        230        240 
NRDPAIGRDA IRALMAAVDE YIPTPERPID QPFLMPIEDV FSISGRGTVV TGRVERGIVK 

       250        260        270        280        290        300 
VGEEVEIVGI RDTRKTTVTG VEMFRKLLDQ GQAGDNIGAL IRGIGREDVE RGQVLCKPGS 

       310        320        330        340        350        360 
VTPHTKFKAE AYILTKEEGG RHTPFFTNYR PQFYFRTTDV TGIVSLPEGT EMVMPGDNVS 

       370        380        390 
VEVELIVPIA MEEGLRFAIR EGGRTVGAGV VASIIK 

« Hide

References

[1]"Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1 and SL003B-26A1 EMBL ADZ70150.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002568 Genomic DNA. Translation: ADZ70150.1.
CP002568 Genomic DNA. Translation: ADZ70163.1.
RefSeqYP_004303451.1. NC_015259.1.
YP_004303465.1. NC_015259.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADZ70150; ADZ70150; SL003B_1723.
ADZ70163; ADZ70163; SL003B_1737.
GeneID10419073.
10421702.
KEGGpgv:SL003B_1723.
pgv:SL003B_1737.
PATRIC47181356. VBIPolGil182274_1766.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.
OMASHIEYST.

Enzyme and pathway databases

BioCycPGIL991905:GJ0L-1748-MONOMER.
PGIL991905:GJ0L-1763-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF2J5R7_POLGS
AccessionPrimary (citable) accession number: F2J5R7
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)